View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_low_53 (Length: 380)
Name: NF2176_low_53
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_low_53 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 11 - 364
Target Start/End: Complemental strand, 48561746 - 48561391
Alignment:
| Q |
11 |
caaagggccaattatcagaaatgtactgcacctttattggtggttctgttttttggggcgaaattaagtgggagaaggagcgataattgctccctcgtta |
110 |
Q |
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| T |
48561746 |
caaagggccaattatcagaaatgtactgcacctttattggtggttctgttttttggggcgaaattaagtgggagaaggagcgataattgctccctcgtta |
48561647 |
T |
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| Q |
111 |
taataactaactcaggaaacaaaatctttcagaatcttccagaatcaataccatagcttgatacggtaaattacataaatttcacaaatcttcagttaca |
210 |
Q |
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| T |
48561646 |
taataactaactcaggaaacaaaatctttcagaatcttccagaatcaataccatagcttgatacggtaaattacataaatttcacaaatcttcagttaca |
48561547 |
T |
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| Q |
211 |
ctcacatcacatcgtgacattaccacgtttcaaaaatttgaaatcctgaacgcgtaagtagatatataaatatacactaatcttaatattctttggttaa |
310 |
Q |
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| T |
48561546 |
ctcacatcacatcgtgacattaccacgtttcaaaaatttgaaatcctgaacgcgtaagtagatatataaatatatactaatcttaatcttctttggttaa |
48561447 |
T |
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| Q |
311 |
atatgtagtaatctttgttttattttatttgttcagt--gagaattagggttgatg |
364 |
Q |
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| T |
48561446 |
atatatagtaatctttgttttattttatttgttaagtgagagaattagggttgatg |
48561391 |
T |
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