View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_low_55 (Length: 361)
Name: NF2176_low_55
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_low_55 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 10895255 - 10895591
Alignment:
| Q |
18 |
aacattggtaattgctgtaaaattatcaagtctaagatctcaacttaaacttgataattttcattgtcgtaaaaacccaggtcccatcttgttgtaagtg |
117 |
Q |
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| T |
10895255 |
aacattggtaattgctgtaaaattatcaagtctaagatctcaacttagacttgataattttcattgccgtaaaaacccaggtcccatcttgttggcagtg |
10895354 |
T |
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| Q |
118 |
ccatgttgcatgaaattttggtattgattgtatgattgtgttatgtttcagtcccttattggtataacttctatgaaatccattgcactatgtatttcta |
217 |
Q |
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| T |
10895355 |
ccatgttgcatgaaattttggtattgattgtatgattatgttatgtttcagtcccttattggtatagcttctatgaaatccattgcactatgtatttttg |
10895454 |
T |
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| Q |
218 |
aggatagaatatgttagtttccctcctcaagggacgtgaatgaaccagaagtcatataatttggttatatatttcatttttctttttataaatggttaga |
317 |
Q |
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| T |
10895455 |
aggatagaatatgagagattctctcctcaagggacgtgaatgaaccagaagtcatataatttggttatatatttcatttttctttttataaatggttaga |
10895554 |
T |
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| Q |
318 |
atcatagtaatattaaaattacctcaggagtattata |
354 |
Q |
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| T |
10895555 |
atgatagtaatattaaaattacctcaggggtattata |
10895591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 121; Significance: 6e-62; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 116 - 304
Target Start/End: Complemental strand, 23714455 - 23714268
Alignment:
| Q |
116 |
tgccatgttgcatgaaattttggtattgattgtatgattgtgttatgtttcagtcccttattggtataacttctatgaaatccattgcactatgtatttc |
215 |
Q |
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| T |
23714455 |
tgccatgttgcatgaatttttggtattgattgtatgattatgttatgtttcaatcccttattggtatagcttctatgaa-tccattgcactatgtatttt |
23714357 |
T |
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| Q |
216 |
taaggatagaatatgttagtttccctcctcaagggacgtgaatgaaccagaagtcatataatttggttatatatttcatttttcttttt |
304 |
Q |
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| T |
23714356 |
tgaggatagaatatgagagattctctcctcaagggacgtgaatgaaccagaagtgatacagtttggttatatttttcattttttttttt |
23714268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 116 - 304
Target Start/End: Complemental strand, 23732911 - 23732724
Alignment:
| Q |
116 |
tgccatgttgcatgaaattttggtattgattgtatgattgtgttatgtttcagtcccttattggtataacttctatgaaatccattgcactatgtatttc |
215 |
Q |
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| T |
23732911 |
tgccatgttgcatgaatttttggtattgattgtatgattatgttatgtttcaatcccttattggtatagcttctatgaa-tccattgcactatgtatttt |
23732813 |
T |
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| Q |
216 |
taaggatagaatatgttagtttccctcctcaagggacgtgaatgaaccagaagtcatataatttggttatatatttcatttttcttttt |
304 |
Q |
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| T |
23732812 |
tgaggatagaatatgagagattctctcctcaagggacgtgaatgaaccagaagtgatacagtttggttatatttttcattttttttttt |
23732724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 116 - 304
Target Start/End: Complemental strand, 23751366 - 23751179
Alignment:
| Q |
116 |
tgccatgttgcatgaaattttggtattgattgtatgattgtgttatgtttcagtcccttattggtataacttctatgaaatccattgcactatgtatttc |
215 |
Q |
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| T |
23751366 |
tgccatgttgcatgaatttttggtattgattgtatgattatgttatgtttcaatcccttattggtatagcttctatgaa-tccattgcactatgtatttt |
23751268 |
T |
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| Q |
216 |
taaggatagaatatgttagtttccctcctcaagggacgtgaatgaaccagaagtcatataatttggttatatatttcatttttcttttt |
304 |
Q |
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| T |
23751267 |
tgaggatagaatatgagagattctctcctcaagggacgtgaatgaaccagaagtgatacagtttggttatatttttcattttttttttt |
23751179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 116 - 304
Target Start/End: Complemental strand, 23696022 - 23695835
Alignment:
| Q |
116 |
tgccatgttgcatgaaattttggtattgattgtatgattgtgttatgtttcagtcccttattggtataacttctatgaaatccattgcactatgtatttc |
215 |
Q |
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| T |
23696022 |
tgccatgttgcatgaatttttggtattgattgtatgattatgttatgtttcaatcccttattggtatagcttctatgaa-tccattgtactatgtatttt |
23695924 |
T |
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| Q |
216 |
taaggatagaatatgttagtttccctcctcaagggacgtgaatgaaccagaagtcatataatttggttatatatttcatttttcttttt |
304 |
Q |
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| T |
23695923 |
tgaggatagaatatgagagattctctcctcaagggacgtgaatgaaccagaagtgatacagtttggttatatttttcattttttttttt |
23695835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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