View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_low_58 (Length: 355)
Name: NF2176_low_58
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_low_58 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 6946079 - 6945726
Alignment:
| Q |
1 |
tcaagccagagaaaaggcaccatgaactacatcccagaagattgaccaacaatcaactattacaccaaaggattaaactccacagatcacctgacccacc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6946079 |
tcaagccagagaaaaggcaccatgaactacatcccagaagattgaccaacaatcaactatttcaccaaaggattaaactccacagatcacctgacccacc |
6945980 |
T |
|
| Q |
101 |
aaacctcacaatgcaaaggaaaaacagttaaccgttagcgaatcaaaagacaaaataccccaatctgctgccattaaagaaaactaaaatgagacctcca |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6945979 |
aaacctcacaatgcaaaggaaaaacagttaactgttagcgaatcaaaagacaaaataccccaatctgctgccattaaagaaaactaaaatgagacctcca |
6945880 |
T |
|
| Q |
201 |
agacaactaatacagaaacagtgagacaaaacaccaatgcatcaatctggtctgaaacttcaggtcactatatcgcccatacacaccgtcggattcacac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6945879 |
agacaactaatacagaaacagtgagacaaaacaccaatgcatcaatctggtctgaaacttcaggtcactatatcgcccatacacaccctcggattcacac |
6945780 |
T |
|
| Q |
301 |
accattgattaatgttgtaacctgtgctctttgattcatgcaaatctggttcat |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6945779 |
accattgattaatgttgtaacctgtgctctttgattcatgcaaatctggttcat |
6945726 |
T |
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