View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_low_59 (Length: 343)
Name: NF2176_low_59
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_low_59 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 18101121 - 18101448
Alignment:
| Q |
1 |
ggtctagtttgcatatttgggattctgttggagtgggatatgaagggagtgtgtttgaatgtgaaatgtttgaaattgatgtaaaaaatataaagaaagc |
100 |
Q |
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| T |
18101121 |
ggtctagtttgcatatttgggattctgttggagtgggatatgaagggagtgtgtttgaatgtgaaatgtttgaaattgatgtaaaaaatataaagaaagc |
18101220 |
T |
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| Q |
101 |
taaaaggaaagttaatgattgcattttttggtattatgttgagtttgaatattgtgttgagtttggactttggagtagtgggtgagatgctgggaaattt |
200 |
Q |
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| T |
18101221 |
taaaaggaaagctaatgattgcattttttggtattatgttgagtttgaatattgtgttgagtttggactttggagtagtgggtgagatgctgggaaattt |
18101320 |
T |
|
| Q |
201 |
gtttggtgttagtacataaattggattgggtaataatagcatgcggatgaaatgagagttgatatggttcacaaggttttgaaagcttcgaagaaaagtg |
300 |
Q |
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| T |
18101321 |
gtttggtgttagtacataaattggattgggtaataatagcatacggatgaaatgagagttgatatggttcacaaggttttgaaagctttgaagaaaagtg |
18101420 |
T |
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| Q |
301 |
tgtcagagaatttgacagtttgtggtgt |
328 |
Q |
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| T |
18101421 |
tgtcagagaatttgacagtttgtggtgt |
18101448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 37858729 - 37859056
Alignment:
| Q |
1 |
ggtctagtttgcatatttgggattctgttggagtgggatatgaagggagtgtgtttgaatgtgaaatgtttgaaattgatgtaaaaaatataaagaaagc |
100 |
Q |
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| T |
37858729 |
ggtctagtttgcatatttgggattctgttggagtgggatatgaagggagtgtgtttgaatgtgaaatgtttgaaattgatgtaaaaaatataaagaaagc |
37858828 |
T |
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| Q |
101 |
taaaaggaaagttaatgattgcattttttggtattatgttgagtttgaatattgtgttgagtttggactttggagtagtgggtgagatgctgggaaattt |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37858829 |
taaaaggaaagctaatgattgcattttttggtattatgttgagtttgaatattgtgttgagtttggactttggagtagtgggtgagatgctgggaaattt |
37858928 |
T |
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| Q |
201 |
gtttggtgttagtacataaattggattgggtaataatagcatgcggatgaaatgagagttgatatggttcacaaggttttgaaagcttcgaagaaaagtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37858929 |
gtttggtgttagtacataaattggattgggtaataatagcatacggatgaaatgagagttgatatggttcacaaggttttgaaagctttgaagaaaagtg |
37859028 |
T |
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| Q |
301 |
tgtcagagaatttgacagtttgtggtgt |
328 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
37859029 |
tgtcagagaatttgacagtttgtggtgt |
37859056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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