View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2176_low_62 (Length: 318)
Name: NF2176_low_62
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_low_62 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 39507800 - 39508108
Alignment:
| Q |
1 |
caagtcaataataaggtctgtgtttgatatcttagctagttcaagaaaattgagggcctggcttagatgaaaattttacaagattctattttccttacat |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
39507800 |
caagtcaataataaggtccgtgtttgatatcttagctagttcaagaaaattgagggcctggcttagatgaaaattttacaagattctattttccttactt |
39507899 |
T |
|
| Q |
101 |
taaattcggagtgtgctccactctatgtcttacattcgattgatactaacaattcttatgttgtgtcggtttatacaaggttttgtcttgacttcaattg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
39507900 |
taaattcggagtgtgctccactctatgtcttacattcgattgatactaacaattcttatgttgtgtcggtctatataaggttttgtcttgacttcaatta |
39507999 |
T |
|
| Q |
201 |
cgtcccccctaatggatggtgggattggtcctccggattagtcggtctttaagctaaataccgacttttcgaagnnnnnnnntcaaaactaactcctctc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |||| |||||||||||||||||| |
|
|
| T |
39508000 |
cgtcccccctaatggatggtgggattggtcctccaaattagtcggtctttaagctaaataccgattttttgaagaaaaaaaatcaaaactaactcctctc |
39508099 |
T |
|
| Q |
301 |
aagtattat |
309 |
Q |
| |
|
||||||||| |
|
|
| T |
39508100 |
aagtattat |
39508108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 37056528 - 37056571
Alignment:
| Q |
204 |
cccccctaatggatggtgggattggtcctccggattagtcggtc |
247 |
Q |
| |
|
|||| ||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
37056528 |
ccccgctagtggacggtgggattggtcctccggattagtcggtc |
37056571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 250
Target Start/End: Complemental strand, 28409303 - 28409245
Alignment:
| Q |
192 |
cttcaattgcgtcccccctaatggatggtgggattggtcctccggattagtcggtcttt |
250 |
Q |
| |
|
||||||||| | |||| ||| |||| |||||||||||||| ||| |||||||||||||| |
|
|
| T |
28409303 |
cttcaattgggcccccactagtggacggtgggattggtcccccgaattagtcggtcttt |
28409245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 247
Target Start/End: Original strand, 43504749 - 43504783
Alignment:
| Q |
213 |
tggatggtgggattggtcctccggattagtcggtc |
247 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43504749 |
tggatggtgggattggtcccccggattagtcggtc |
43504783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 37565284 - 37565336
Alignment:
| Q |
148 |
aacaattcttatgttgtgtcggtttatacaaggttttgtcttgacttcaattg |
200 |
Q |
| |
|
|||||||| ||||||| ||||||| |||||||||||||| ||||||||||| |
|
|
| T |
37565284 |
aacaattcatatgttgggtcggttaatacaaggttttgttccgacttcaattg |
37565336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 247
Target Start/End: Original strand, 28090642 - 28090674
Alignment:
| Q |
215 |
gatggtgggattggtcctccggattagtcggtc |
247 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |
|
|
| T |
28090642 |
gatggtgggattggtcccccggattagtcggtc |
28090674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University