View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2176_low_64 (Length: 318)

Name: NF2176_low_64
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2176_low_64
NF2176_low_64
[»] chr4 (7 HSPs)
chr4 (1-81)||(29847895-29847975)
chr4 (9-73)||(1745448-1745511)
chr4 (23-73)||(20650006-20650055)
chr4 (35-73)||(30257444-30257482)
chr4 (40-77)||(21121654-21121691)
chr4 (36-72)||(53813910-53813946)
chr4 (38-73)||(25100393-25100428)
[»] chr6 (3 HSPs)
chr6 (9-71)||(6257243-6257304)
chr6 (36-72)||(30892321-30892357)
chr6 (40-124)||(31303998-31304075)
[»] chr5 (2 HSPs)
chr5 (35-73)||(24099443-24099481)
chr5 (36-73)||(12566923-12566960)
[»] chr8 (2 HSPs)
chr8 (36-73)||(41940096-41940133)
chr8 (40-81)||(5950139-5950180)
[»] chr1 (4 HSPs)
chr1 (36-73)||(8326998-8327035)
chr1 (36-81)||(18628967-18629012)
chr1 (36-81)||(25023486-25023531)
chr1 (36-81)||(50959523-50959568)
[»] chr2 (4 HSPs)
chr2 (9-73)||(5136200-5136263)
chr2 (9-124)||(39711673-39711786)
chr2 (36-81)||(9848114-9848159)
chr2 (36-72)||(8216773-8216809)
[»] chr3 (1 HSPs)
chr3 (45-73)||(28180528-28180556)


Alignment Details
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 29847895 - 29847975
Alignment:
Q  1 aggtcaatccaccaaaaacaacagtttcaaagcagacgcgtaaaaactcagattgagggatgagttcaatacgccagtaac 81  Q
    |||||||||||||||| || || |||||||||||||||||||||||||||||| |||||||||||  ||| ||||||||||    
T  29847895 aggtcaatccaccaaacactacggtttcaaagcagacgcgtaaaaactcagatcgagggatgagtcaaatgcgccagtaac 29847975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 1745511 - 1745448
Alignment:
Q  9 ccaccaaaaacaacagtttcaaagcagacgcgtaaaaactcagattgagggatgagttcaatacg 73  Q
    |||||||| ||||||||||| ||| |||||||||| ||||||||||||||||||||| |||||||    
T  1745511 ccaccaaacacaacagtttccaag-agacgcgtaagaactcagattgagggatgagtccaatacg 1745448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 20650055 - 20650006
Alignment:
Q  23 agtttcaaagcagacgcgtaaaaactcagattgagggatgagttcaatacg 73  Q
    ||||||||| |||| |||||| |||||||||||||||||||||||||||||    
T  20650055 agtttcaaa-cagatgcgtaagaactcagattgagggatgagttcaatacg 20650006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 30257482 - 30257444
Alignment:
Q  35 gacgcgtaaaaactcagattgagggatgagttcaatacg 73  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  30257482 gacgcgtaaaaactcagatcgagggatgagttcaatacg 30257444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 21121691 - 21121654
Alignment:
Q  40 gtaaaaactcagattgagggatgagttcaatacgccag 77  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  21121691 gtaaaaactcaaattgagggatgagttcaatacgccag 21121654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 53813910 - 53813946
Alignment:
Q  36 acgcgtaaaaactcagattgagggatgagttcaatac 72  Q
    |||||||||||||||||| ||||||||||||||||||    
T  53813910 acgcgtaaaaactcagatcgagggatgagttcaatac 53813946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 25100428 - 25100393
Alignment:
Q  38 gcgtaaaaactcagattgagggatgagttcaatacg 73  Q
    |||||||||||||||| |||||||||||||||||||    
T  25100428 gcgtaaaaactcagatcgagggatgagttcaatacg 25100393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 6257304 - 6257243
Alignment:
Q  9 ccaccaaaaacaacagtttcaaagcagacgcgtaaaaactcagattgagggatgagttcaata 71  Q
    |||||||| |||||||||||||| || |||||||| ||||||||| ||||||||||| |||||    
T  6257304 ccaccaaacacaacagtttcaaa-caaacgcgtaagaactcagatcgagggatgagtccaata 6257243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 30892321 - 30892357
Alignment:
Q  36 acgcgtaaaaactcagattgagggatgagttcaatac 72  Q
    |||||||||||||||||| ||||||||||||||||||    
T  30892321 acgcgtaaaaactcagatcgagggatgagttcaatac 30892357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 31304075 - 31303998
Alignment:
Q  40 gtaaaaactcagattgagggatgagttcaatacgccagtaacgtaactacagaccctttcggattaacggaaccagactctttcg 124  Q
    |||| ||||||||| ||||||||||||||||||| |||||||       ||||||||||||| ||||  |||||| |||||||||    
T  31304075 gtaagaactcagatcgagggatgagttcaatacgtcagtaac-------cagaccctttcgggttaatcgaaccaaactctttcg 31303998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 73
Target Start/End: Complemental strand, 24099481 - 24099443
Alignment:
Q  35 gacgcgtaaaaactcagattgagggatgagttcaatacg 73  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  24099481 gacgcgtaaaaactcagatcgagggatgagttcaatacg 24099443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 12566960 - 12566923
Alignment:
Q  36 acgcgtaaaaactcagattgagggatgagttcaatacg 73  Q
    |||||||||||||||||| |||||||||||||||||||    
T  12566960 acgcgtaaaaactcagatcgagggatgagttcaatacg 12566923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 41940096 - 41940133
Alignment:
Q  36 acgcgtaaaaactcagattgagggatgagttcaatacg 73  Q
    |||||||||||||||||| |||||||||||||||||||    
T  41940096 acgcgtaaaaactcagatcgagggatgagttcaatacg 41940133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 5950139 - 5950180
Alignment:
Q  40 gtaaaaactcagattgagggatgagttcaatacgccagtaac 81  Q
    ||||||||||| || ||||||||||||||||||| |||||||    
T  5950139 gtaaaaactcaaatcgagggatgagttcaatacgtcagtaac 5950180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 8326998 - 8327035
Alignment:
Q  36 acgcgtaaaaactcagattgagggatgagttcaatacg 73  Q
    |||||||||||||||||| |||||||||||||||||||    
T  8326998 acgcgtaaaaactcagatcgagggatgagttcaatacg 8327035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 18628967 - 18629012
Alignment:
Q  36 acgcgtaaaaactcagattgagggatgagttcaatacgccagtaac 81  Q
    |||||||| ||||||||||||||||||||| ||||||| |||||||    
T  18628967 acgcgtaagaactcagattgagggatgagtccaatacgtcagtaac 18629012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 25023486 - 25023531
Alignment:
Q  36 acgcgtaaaaactcagattgagggatgagttcaatacgccagtaac 81  Q
    ||||||||||||||| |||||||||||| | ||||||| |||||||    
T  25023486 acgcgtaaaaactcaaattgagggatgaatccaatacgtcagtaac 25023531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Original strand, 50959523 - 50959568
Alignment:
Q  36 acgcgtaaaaactcagattgagggatgagttcaatacgccagtaac 81  Q
    |||||||| ||||||||| ||||||||||| ||||||| |||||||    
T  50959523 acgcgtaagaactcagatcgagggatgagtccaatacgtcagtaac 50959568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 5136263 - 5136200
Alignment:
Q  9 ccaccaaaaacaacagtttcaaagcagacgcgtaaaaactcagattgagggatgagttcaatacg 73  Q
    |||||||| ||||| ||||| || ||||||||||| ||||||||| ||||||||||| |||||||    
T  5136263 ccaccaaatacaacggtttccaa-cagacgcgtaagaactcagatcgagggatgagtccaatacg 5136200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 124
Target Start/End: Original strand, 39711673 - 39711786
Alignment:
Q  9 ccaccaaaaacaac-agtttcaaagcagacgcgtaaaaactcagattgagggatgagttcaatacgccagtaacgtaactacagaccctttcgg-attaa 106  Q
    |||||||| ||||| ||||||||  |||| ||||||||||||| ||| ||  ||||||||||||||  ||||||  |   |||||||||||||| |||||    
T  39711673 ccaccaaacacaaccagtttcaat-cagatgcgtaaaaactcaaatttagtaatgagttcaatacgttagtaaccaa---acagaccctttcggtattaa 39711768  T
Q  107 cggaaccagactctttcg 124  Q
    ||||||||||| ||||||    
T  39711769 cggaaccagaccctttcg 39711786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 9848159 - 9848114
Alignment:
Q  36 acgcgtaaaaactcagattgagggatgagttcaatacgccagtaac 81  Q
    |||||||| ||||||||| ||||||||||| ||||||| |||||||    
T  9848159 acgcgtaagaactcagatcgagggatgagtccaatacgtcagtaac 9848114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 8216773 - 8216809
Alignment:
Q  36 acgcgtaaaaactcagattgagggatgagttcaatac 72  Q
    ||||||||||||||||||  |||||||||||||||||    
T  8216773 acgcgtaaaaactcagatcaagggatgagttcaatac 8216809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 73
Target Start/End: Original strand, 28180528 - 28180556
Alignment:
Q  45 aactcagattgagggatgagttcaatacg 73  Q
    |||||||||||||||||||||||||||||    
T  28180528 aactcagattgagggatgagttcaatacg 28180556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University