View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_low_66 (Length: 315)
Name: NF2176_low_66
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_low_66 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 304
Target Start/End: Original strand, 51445475 - 51445762
Alignment:
| Q |
18 |
cttattgaccaaataactgtataattcaataaacttcacgggtatcatt--acttgtattacttctacatcaaatttcagaaagnnnnnnnnnnnncata |
115 |
Q |
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| T |
51445475 |
cttattaaccaaataactgtataattcaataaacttcacgggtatcattttacttgtattacttctacatcaaatttcagaaagaaatcaaaaaa-cata |
51445573 |
T |
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| Q |
116 |
agaaaatttgtccacctttttaaggttatagggattcagaaaaacattaaaagacaaataaatttaagaacagtgatatctaaaggtatatcatatttta |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51445574 |
agaaaatttgtccacctttttaaggttatagggattcagaaaaacattaaaagacaaataaatttaagaacagtgatatctaaaggtatatcatatttta |
51445673 |
T |
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| Q |
216 |
ttacttttatatgttcatggtttacaaggtatgctcagtgtttaaatttttaaattcatatacctgtaattttattataaagtattcat |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51445674 |
ttacttttatatgttcatggtttacaaggtatgctcagtgtttaaatttttaaattcatatacctgtaattttattataaagtattcat |
51445762 |
T |
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