View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_low_68 (Length: 311)
Name: NF2176_low_68
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_low_68 |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 29222501 - 29222797
Alignment:
| Q |
1 |
cagccatggagttagtattttt-atgttggattgatggatattgagttagtgtttaagaatatatatttatgttgcatgcatatggagtta-gaattttt |
98 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29222501 |
cagcgatggagttagtattttttatgttggattgatggatattgagttagtgtttaagaatatatatttatgttgcatgcatatggagttaagaattttt |
29222600 |
T |
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| Q |
99 |
tgcatggacaaaaccaaaatctaagaatatgcaaatttgttttgttaatgcaggaagacaacacaaatgtggacaagcacacacaaaaccaacatggatt |
198 |
Q |
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| T |
29222601 |
tgcatggacaaaaccaaaatctaagaatatgcaaatttgttttgttaatgcaggaagacaacacaaatgtggacaagcacacacaaaaccaacatggatt |
29222700 |
T |
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| Q |
199 |
ttagcttctcaattattgtcttcctccttcattttgttatcctttttctcnnnnnnnctcctgtttattcttctagaacaggtatccaccaattagc |
295 |
Q |
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| T |
29222701 |
ttagcttctcaattattgtcttcctccttcattttgttatcctttttctctttttttctcctgtttattcttctagaacaggtatccaccaattagc |
29222797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 37 - 214
Target Start/End: Original strand, 26919289 - 26919467
Alignment:
| Q |
37 |
gatattgagttagtgtttaagaatatatatttatgttgcatgcatatggagttagaattttttgcatggacaaaaccaaaatctaaga--atatgcaaat |
134 |
Q |
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| T |
26919289 |
gatattgaattagtatttaagaatatatatttacgttcgatgcatatggagttagaattttt-gcatggacaaaacaaaaatctaagagaataaacaaat |
26919387 |
T |
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| Q |
135 |
ttgttttgttaatgcaggaagacaacacaaatgtggacaagcacacacaaaaccaacatggattttagcttctcaattat |
214 |
Q |
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| T |
26919388 |
ttgttttgttaatgcaggaagacaacacaaacgtgtacaagaacacaaaaaacccacacggattttagctttccaattat |
26919467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 109 - 214
Target Start/End: Original strand, 29252913 - 29253018
Alignment:
| Q |
109 |
aaaccaaaatctaagaatatgcaaatttgttttgttaatgcaggaagacaacacaaatgtggacaagcacacacaaaaccaacatggattttagcttctc |
208 |
Q |
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|||||||| | |||||||| ||||||||||| || |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
29252913 |
aaaccaaactttaagaataagcaaatttgttctggtaatgcaggaagacaacataaatgtgggcaagcacacacaaaaccaacatggattttagcttccc |
29253012 |
T |
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| Q |
209 |
aattat |
214 |
Q |
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|||||| |
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| T |
29253013 |
aattat |
29253018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 102 - 242
Target Start/End: Complemental strand, 29215750 - 29215609
Alignment:
| Q |
102 |
atggacaaaaccaaaatctaagaatatgcaaatttgttttgttaatgcaggaagacaacacaaatgtggacaagcacacacaaa-accaacatggatttt |
200 |
Q |
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||||||||||||||||| |||||| | ||||| ||||||||| ||||| |||||||||||||||||||| || ||||||||| || |||||||||||| |
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| T |
29215750 |
atggacaaaaccaaaatataagaacactcaaatgtgttttgttgatgcaagaagacaacacaaatgtggagaaaaacacacaaacacaaacatggatttt |
29215651 |
T |
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| Q |
201 |
agcttctcaattattgtcttcctccttcattttgttatcctt |
242 |
Q |
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| || | || |||| | |||||||||||||| || ||||| |
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| T |
29215650 |
aactccccagttatctccctcctccttcattttcttctcctt |
29215609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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