View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_low_69 (Length: 310)
Name: NF2176_low_69
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_low_69 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 8674964 - 8674672
Alignment:
| Q |
1 |
tcattgatgatggtgttaaatttgttcaacctttttagttctttgatggcttgactaagttgatcaacactatcattcatttgattcacacaatcttgca |
100 |
Q |
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| T |
8674964 |
tcattgatgatggtgttaaatttgttcaacctttttagttctttgatggcttgactaagttgatcaacactatcattcatttgattcacacaatcttgaa |
8674865 |
T |
|
| Q |
101 |
cggttagatacatccttttgttgttgtgatcaatagctttgagttccttcgccgcattcaaaaggtaccctcttgtttgcaatgctcttgagaggctaac |
200 |
Q |
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| T |
8674864 |
cggttaggtacatcctcttgttgttgtgatcaatagctttgagttccttcgccgcattcaaaaggtaccctcttgtttgcaatgctcttgagaggctaac |
8674765 |
T |
|
| Q |
201 |
ggataaggcaacttgagctaagtgttgaggtccatttatggttgaactggaaaatttgttaaggcaacgaatacatagagtagggtagagggt |
293 |
Q |
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| T |
8674764 |
ggataaggcaacttgagctaagtgttgaggtccatttatggttgaactggaaaatttgttaaggcaacgaatacatagagtagggtagagggt |
8674672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 8696071 - 8696363
Alignment:
| Q |
1 |
tcattgatgatggtgttaaatttgttcaacctttttagttctttgatggcttgactaagttgatcaacactatcattcatttgattcacacaatcttgca |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8696071 |
tcattgatgattgtgttaaatttgttcaacctttttagttctttgatggcttgactaagttgatcaacactatcattcatttgattcacacaatcttgca |
8696170 |
T |
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| Q |
101 |
cggttagatacatccttttgttgttgtgatcaatagctttgagttccttcgccgcattcaaaaggtaccctcttgtttgcaatgctcttgagaggctaac |
200 |
Q |
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| T |
8696171 |
cggttagatacatccttttgttgttgtgatcaatagctttgagttccttggccgcattcaaaaggtaccctcttgtttgcaatgctcttgagaggctcgc |
8696270 |
T |
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| Q |
201 |
ggataaggcaacttgagctaagtgttgaggtccatttatggttgaactggaaaatttgttaaggcaacgaatacatagagtagggtagagggt |
293 |
Q |
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| T |
8696271 |
gaataaggcaacatgtgctaagtgttgaggtccatttatggttgatttggaaaacttgtttaggcaacgaatgcataaatcagggtagagggt |
8696363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 8687502 - 8687794
Alignment:
| Q |
1 |
tcattgatgatggtgttaaatttgttcaacctttttagttctttgatggcttgactaagttgatcaacactatcattcatttgattcacacaatcttgca |
100 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8687502 |
tcattgatgattgtgttaaatttattcaacctttttagttctttgatggcttgactaagttgatcaacactatcattaatttgattcacacaatcttgca |
8687601 |
T |
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| Q |
101 |
cggttagatacatccttttgttgttgtgatcaatagctttgagttccttcgccgcattcaaaaggtaccctcttgtttgcaatgctcttgagaggctaac |
200 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| || |
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| T |
8687602 |
cggttaggtacatcctcttgttgttgtgatcaatagctttgagttcctttgccgcattcaaaaggtatcctcttgtttgcaatgctctcgagaggctcac |
8687701 |
T |
|
| Q |
201 |
ggataaggcaacttgagctaagtgttgaggtccatttatggttgaactggaaaatttgttaaggcaacgaatacatagagtagggtagagggt |
293 |
Q |
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|||||||||||| | ||||||||||||||||||||||||||||| ||||||| || |||||||||||||| || | | |||||||||||| |
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| T |
8687702 |
ggataaggcaacatttgctaagtgttgaggtccatttatggttgatttggaaaacttcttaaggcaacgaatgcacaaatcagggtagagggt |
8687794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 8693195 - 8692906
Alignment:
| Q |
1 |
tcattgatgatggtgttaaatttgttcaacctttttagttctttgatggcttgactaagttgatcaacactatcattcatttgattcacacaatcttgca |
100 |
Q |
| |
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||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8693195 |
tcattgatgattgtgttaaatttattcaacctttttagttctttgatggcttggctaagttgatcaacactatcattgatttgattcacacaatcttgca |
8693096 |
T |
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| Q |
101 |
cggttagatacatccttttgttgttgtgatcaatagctttgagttccttcgccgcattcaaaaggtaccctcttgtttgcaatgctcttgagaggctaac |
200 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||| ||| || |
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| T |
8693095 |
cggttaggtacatccttttgttgttgtgatcaatagctttgagttccttggccacattcaaaaggtaccctcttgtttgcaatgctctagagaagctcac |
8692996 |
T |
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| Q |
201 |
ggataaggcaacttgagctaagtgttgaggtccatttatggttgaactggaaaatttgttaaggcaacgaatacatagagtagggtagag |
290 |
Q |
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|||||||||||| || |||||||||||||||||||||||| |||| ||||||| ||||| ||||||||||| |||| | ||||||||| |
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| T |
8692995 |
ggataaggcaacatgtgctaagtgttgaggtccatttatgtttgatttggaaaacttgtttaggcaacgaatgcataaatcagggtagag |
8692906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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