View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2176_low_74 (Length: 307)

Name: NF2176_low_74
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2176_low_74
NF2176_low_74
[»] chr2 (1 HSPs)
chr2 (1-297)||(2016409-2016707)
[»] chr7 (1 HSPs)
chr7 (125-193)||(6933247-6933315)
[»] chr5 (2 HSPs)
chr5 (125-193)||(21547757-21547825)
chr5 (148-193)||(26291919-26291964)
[»] chr4 (3 HSPs)
chr4 (125-193)||(509308-509376)
chr4 (125-193)||(18088559-18088627)
chr4 (126-193)||(9071911-9071978)
[»] chr6 (1 HSPs)
chr6 (125-184)||(30234635-30234694)
[»] scaffold0002 (1 HSPs)
scaffold0002 (126-180)||(170999-171053)


Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 2016707 - 2016409
Alignment:
Q  1 gacatttatatgatacttctcaagggacatataatgcttttattggagaacatgagaaaaaagtgacttcattgatccatacattatgttatatatagtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2016707 gacatttatatgatacttctcaagggacatataatgcttttattggagaacatgagaaaaaagtgacttcattgatccatacattatgttatatatagtg 2016608  T
Q  101 ctac--catcaatgattataaatggtgacacattgagtacatcttatacatgtatcataaatctttactgaatgtgacattgtatcaatagtaatagtaa 198  Q
    |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2016607 ctatatcatcaatgattataaatggtgacacattgagtacatcttatacatgtatcataaatctttactgaatgtgacattgtatcaatagtaatagtaa 2016508  T
Q  199 tttttaaacatnnnnnnntaaggggcgtcaaacgggcacctatatgcgtcctatagaaagatagaaacaattagtcttatgatcataagtccgtctctg 297  Q
    |||||||||||       |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2016507 tttttaaacataaaaaaataaggggcgtcaaatgggcacctatatgcatcctatagaaagatagaaacaattagtcttatgatcataagtccgtctctg 2016409  T

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Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 6933315 - 6933247
Alignment:
Q  125 gacacattgagtacatcttatacatgtatcataaatctttactgaatgtgacattgtatcaatagtaat 193  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6933315 gacacattgagtacatcctatacatgtatcataaatctttactgaatgtgacattgtatctatagtaat 6933247  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 21547825 - 21547757
Alignment:
Q  125 gacacattgagtacatcttatacatgtatcataaatctttactgaatgtgacattgtatcaatagtaat 193  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21547825 gacacattgagtacatcctatacatgtatcataaatctttactgaatgtgacattgtatctatagtaat 21547757  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 26291964 - 26291919
Alignment:
Q  148 atgtatcataaatctttactgaatgtgacattgtatcaatagtaat 193  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  26291964 atgtatcataaatctttactgaatgtgacattgtatctatagtaat 26291919  T

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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 125 - 193
Target Start/End: Complemental strand, 509376 - 509308
Alignment:
Q  125 gacacattgagtacatcttatacatgtatcataaatctttactgaatgtgacattgtatcaatagtaat 193  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  509376 gacacattgagtacatcctatacatgtatcataaatctttactgaatgtgacattgtatctatagtaat 509308  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 18088559 - 18088627
Alignment:
Q  125 gacacattgagtacatcttatacatgtatcataaatctttactgaatgtgacattgtatcaatagtaat 193  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18088559 gacacattgagtacatcctatacatgtatcataaatctttactgaatgtgacattgtatctatagtaat 18088627  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 193
Target Start/End: Complemental strand, 9071978 - 9071911
Alignment:
Q  126 acacattgagtacatcttatacatgtatcataaatctttactgaatgtgacattgtatcaatagtaat 193  Q
    ||||||||| |||||| ||||||| ||||| ||||||||| | |||||||||||||||| ||||||||    
T  9071978 acacattgaatacatcctatacatatatcaaaaatctttatttaatgtgacattgtatctatagtaat 9071911  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 184
Target Start/End: Original strand, 30234635 - 30234694
Alignment:
Q  125 gacacattgagtacatcttatacatgtatcataaatctttactgaatgtgacattgtatc 184  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||    
T  30234635 gacacattgagtacatcctatacatgtatcataaatctttattgaatgtgacattatatc 30234694  T

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Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 171053 - 170999
Alignment:
Q  126 acacattgagtacatcttatacatgtatcataaatctttactgaatgtgacattg 180  Q
    ||||||||||| |||| |||||||||||||||||| ||||| |||||||||||||    
T  171053 acacattgagtgcatcctatacatgtatcataaatttttacggaatgtgacattg 170999  T

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