View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2176_low_8 (Length: 669)
Name: NF2176_low_8
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_low_8 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 16)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 196 - 652
Target Start/End: Original strand, 3391649 - 3392105
Alignment:
| Q |
196 |
aaaggcaatagagagctattttcacaaatttgtcttttgaaaagtttttcttctaggtttagccgcttgcgcgcataagatggaggaagggtgggttggt |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
3391649 |
aaaggcaatagagagctattttcacaaatttgtctgttgaaaagtttttcttctaggtttagcctcttgcatgcataagatggaggaagggtgggttggt |
3391748 |
T |
|
| Q |
296 |
gttttgaacgttcgtcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgtttggaccaatcttactatgcttagtcatatta |
395 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
3391749 |
gttttgaatgttcgtcaacaacatgtttgtcaactacgtactttgtttcatttggagcagatcagcgtttggaccaattttactaagcttagtcatatta |
3391848 |
T |
|
| Q |
396 |
tgagaatcaaaaacaaaatcgatgacgatgaaggtttgtctttctgtttcaatagcttatctgatgctacggatgttgtcaatcttatagtggacatact |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3391849 |
tgagaatcaaaaacaaaatcgatgacgatgaaggtttgtctttctgtttcaatagcttatctgatgctacggatgttgtcaatcttatagtggacatact |
3391948 |
T |
|
| Q |
496 |
tccttccaaggttcagttgaatatgaatatgattcctcctcaagaaagatgcattttttctgttgaaatcgtcccaatttgttgcggggatttgattatt |
595 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3391949 |
tccttccaaggttcggttgaatatgaatatgattcctcctgaagaaagatgcattttttctgttgaaatcgtcccaatttgttgcggggatttgattatt |
3392048 |
T |
|
| Q |
596 |
ctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgt |
652 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3392049 |
ctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgt |
3392105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 213 - 652
Target Start/End: Original strand, 3298773 - 3299212
Alignment:
| Q |
213 |
attttcacaaatttgtcttttgaaaagtttttcttctaggtttagccgcttgcgcgcataagatggaggaagggtgggttggtgttttgaacgttcgtca |
312 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3298773 |
attttcacaaatttgtctgttgaaaagtttttcttctaggtttagccgcttgcgtgcataagatggaggaagggtgggttggtgttttgaatgttcgtca |
3298872 |
T |
|
| Q |
313 |
acaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgtttggaccaatcttactatgcttagtcatattatgagaatcaaaaacaaa |
412 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3298873 |
acaacatgtttgtcaactacgtactttgtttcatttggagcagatcagcgtttggaccaatcttactatgcttagtcatattatgagaatcaaaaacaaa |
3298972 |
T |
|
| Q |
413 |
atcgatgacgatgaaggtttgtctttctgtttcaatagcttatctgatgctacggatgttgtcaatcttatagtggacatacttccttccaaggttcagt |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3298973 |
atcgatgacgatgaaggtttgtctttctgtttcaatagcttatctgatgctacggatgttgtcaatcttatagtggacatacttccttccaaggttcggt |
3299072 |
T |
|
| Q |
513 |
tgaatatgaatatgattcctcctcaagaaagatgcattttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgc |
612 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299073 |
tgaatatgaatatgattcctcctgaagaaagatgcattttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgc |
3299172 |
T |
|
| Q |
613 |
tgcttctttcggtccaaatattggtcctattgtcatttgt |
652 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3299173 |
tgcttctttcggtccaaatattggtcctattgtcatttgt |
3299212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 272 - 652
Target Start/End: Complemental strand, 1164442 - 1164083
Alignment:
| Q |
272 |
aagatggaggaagggtgggttggtgttttgaacgttcgtcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgtttggacca |
371 |
Q |
| |
|
|||||||||||||| ||| || |||| |||| ||||||||||||||| ||| | ||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
1164442 |
aagatggaggaaggatggcgtgctgttgtgaatgttcgtcaacaacatgtttctgaactgcgtactttgtttcatttggagcaggtcagcgtttggaacc |
1164343 |
T |
|
| Q |
372 |
atcttactatgcttagtcatattatgagaatcaaaaacaaaatcgatgacgatgaaggtttgtctttctgtttcaatagcttatctgatgctacggatgt |
471 |
Q |
| |
|
||||| ||| || | || || ||||||| || |||| ||| |||| |||||||||||||| |||||||||||||||||||||| |||| || |
|
|
| T |
1164342 |
atcttggtatcgttggaaattttcggagaatcgaatacaacatcaatga------aggtttgtctttctatttcaatagcttatctgatgctgcggaagt |
1164249 |
T |
|
| Q |
472 |
tgtcaatcttatagtggacatacttccttccaaggttcagttgaatatgaatatgattcctcctcaagaaagatgcattttttctgttgaaatcgtccca |
571 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||| ||| | || | ||| | || | ||||||||||||||||||||||| |
|
|
| T |
1164248 |
tgtcaatcttatagtggacatacttcctgcccaggttcagtggaacaagatt--gatcc-------------ataccttttttctgttgaaatcgtccca |
1164164 |
T |
|
| Q |
572 |
atttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgt |
652 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
1164163 |
atttgctgcggggatttgattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgt |
1164083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 272 - 652
Target Start/End: Original strand, 1849324 - 1849683
Alignment:
| Q |
272 |
aagatggaggaagggtgggttggtgttttgaacgttcgtcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgtttggacca |
371 |
Q |
| |
|
|||||||||||||||| || |||| |||| ||||||||||||||| ||| | ||||||||||||||||||||||||||||| ||||||||| || | |
|
|
| T |
1849324 |
aagatggaggaagggttttgtgctgttgtgaatgttcgtcaacaacatgtttctgaactgcgtactttgtttcatttggagcaggtcagcgtttcgaacc |
1849423 |
T |
|
| Q |
372 |
atcttactatgcttagtcatattatgagaatcaaaaacaaaatcgatgacgatgaaggtttgtctttctgtttcaatagcttatctgatgctacggatgt |
471 |
Q |
| |
|
|||| ||| ||| | ||| |||||||||| |||| |||||||| ||||||||||||||||||||||||| ||||||||||| || | || |
|
|
| T |
1849424 |
atctcggtatccttgaaaagattcggagaatcaaatacaacatcgatga------aggtttgtctttctgtttcaatagcatatctgatgctgcgaaagt |
1849517 |
T |
|
| Q |
472 |
tgtcaatcttatagtggacatacttccttccaaggttcagttgaatatgaatatgattcctcctcaagaaagatgcattttttctgttgaaatcgtccca |
571 |
Q |
| |
|
||||||||||||| || |||||||||| || |||||||| ||| | || | ||| | || | ||||||||||||||||||||||| |
|
|
| T |
1849518 |
tgtcaatcttataacgggcatacttcctgccctggttcagtggaacaagatt--gatcc-------------ataccttttttctgttgaaatcgtccca |
1849602 |
T |
|
| Q |
572 |
atttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatttgt |
652 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
1849603 |
atttgctgcggggatttgattattctgcctagtaatattgctgcttctttaggtccaaatattggtcctattgttatttgt |
1849683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 539 - 648
Target Start/End: Original strand, 38987301 - 38987410
Alignment:
| Q |
539 |
gaaagatgcattttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtc |
638 |
Q |
| |
|
||||||| | |||||||||||||||||||||| ||||| |||||||||||||| |||||||| | || ||| ||||||||| |||||||||||||||| |
|
|
| T |
38987301 |
gaaagataccttttttctgttgaaatcgtccccatttgctgcggggatttgatctttctgcctcctaatgttgttgcttctttgggtccaaatattggtc |
38987400 |
T |
|
| Q |
639 |
ctattgtcat |
648 |
Q |
| |
|
|||||||||| |
|
|
| T |
38987401 |
ctattgtcat |
38987410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 522 - 651
Target Start/End: Original strand, 40417871 - 40418003
Alignment:
| Q |
522 |
atatgattcctcctcaa---gaaagatgcattttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttc |
618 |
Q |
| |
|
|||||||||||||| || ||||||| | ||||| ||||||||||||||| ||||| |||||||||||||| |||||||| | || ||| |||||| |
|
|
| T |
40417871 |
atatgattcctcctgaaagtgaaagatacctttttcgtgttgaaatcgtccccatttgctgcggggatttgatctttctgcctcctaatgttgttgcttc |
40417970 |
T |
|
| Q |
619 |
tttcggtccaaatattggtcctattgtcatttg |
651 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |
|
|
| T |
40417971 |
tttcggtgaaaatattggtcctattgtcatttg |
40418003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 295 - 365
Target Start/End: Original strand, 39879188 - 39879258
Alignment:
| Q |
295 |
tgttttgaacgttcgtcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgttt |
365 |
Q |
| |
|
|||| |||| ||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
39879188 |
tgttgtgaatgttcgtcaacaacatgtttgtcagctgcgtactttctttcatttggagcagatcagcgttt |
39879258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 295 - 365
Target Start/End: Original strand, 40411893 - 40411963
Alignment:
| Q |
295 |
tgttttgaacgttcgtcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgttt |
365 |
Q |
| |
|
|||| |||| ||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40411893 |
tgttgtgaatgttcgtcaacaacatgtttgtcagctgcgtactttctttcatttggagcagatcagcgttt |
40411963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 272 - 381
Target Start/End: Original strand, 39725765 - 39725874
Alignment:
| Q |
272 |
aagatggaggaagggtgggttggtgttttgaacgttcgtcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgtttggacca |
371 |
Q |
| |
|
||||||||| |||||||| | |||| |||| ||||||||||||||| ||| |||||| |||||| | |||||||||||||||||||||||| ||||| |
|
|
| T |
39725765 |
aagatggagcaagggtggcgttctgttgtgaaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttggagcagatcagcgttatgacca |
39725864 |
T |
|
| Q |
372 |
atcttactat |
381 |
Q |
| |
|
||||| |||| |
|
|
| T |
39725865 |
atcttgctat |
39725874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 272 - 376
Target Start/End: Original strand, 38987043 - 38987147
Alignment:
| Q |
272 |
aagatggaggaagggtgggttggtgttttgaacgttcgtcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgtttggacca |
371 |
Q |
| |
|
||||||||| |||||||| | |||| |||| ||||||||||||||| ||| |||||| |||||| | |||||||||||||||||||||||| ||||| |
|
|
| T |
38987043 |
aagatggagcaagggtggcgttctgttgtgaaagttcgtcaacaacatgtttctcaacttcgtactgtctttcatttggagcagatcagcgttatgacca |
38987142 |
T |
|
| Q |
372 |
atctt |
376 |
Q |
| |
|
||||| |
|
|
| T |
38987143 |
atctt |
38987147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 550 - 635
Target Start/End: Original strand, 39399520 - 39399605
Alignment:
| Q |
550 |
tttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattg |
635 |
Q |
| |
|
||||| ||||||||||||||| ||||| ||||||||||||||| |||||||| | || |||||||||| |||||| ||||||||| |
|
|
| T |
39399520 |
tttttttgttgaaatcgtccccatttgctgcggggatttgatttttctgcctcctgatgttgctgcttcgttcggtgcaaatattg |
39399605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 539 - 635
Target Start/End: Original strand, 39726023 - 39726119
Alignment:
| Q |
539 |
gaaagatgcattttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattg |
635 |
Q |
| |
|
||||||| | |||||||||||||||||||||| ||||| |||||||||||||| |||||||| | | ||| ||||||||| ||||||||||||| |
|
|
| T |
39726023 |
gaaagataccttttttctgttgaaatcgtccccatttgctgcggggatttgatctttctgcctcctaacgttgttgcttctttgggtccaaatattg |
39726119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 550 - 635
Target Start/End: Original strand, 39168522 - 39168607
Alignment:
| Q |
550 |
tttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattg |
635 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||||||||| ||||||| | ||||||||||| || ||||| ||||||||| |
|
|
| T |
39168522 |
tttttttgttgaaatcgtcccaattttctgcggagatttgatttttctgccccctaatattgctgctactctcggtgcaaatattg |
39168607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 550 - 601
Target Start/End: Original strand, 40596251 - 40596302
Alignment:
| Q |
550 |
tttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcct |
601 |
Q |
| |
|
||||||||||||||||||||| ||||| | ||||||||||||| |||||||| |
|
|
| T |
40596251 |
tttttctgttgaaatcgtccccatttgctacggggatttgatttttctgcct |
40596302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 122
Target Start/End: Original strand, 3391534 - 3391567
Alignment:
| Q |
89 |
cacttttattctaatccgtaacaaaaacatgatc |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
3391534 |
cacttttattctaatccgtaacaaaaacatgatc |
3391567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 556 - 635
Target Start/End: Original strand, 39879442 - 39879521
Alignment:
| Q |
556 |
tgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattg |
635 |
Q |
| |
|
|||| |||||||||| ||||| |||||||||||||| |||||||| | | ||| ||||||||| ||||||||||||| |
|
|
| T |
39879442 |
tgttaaaatcgtccccatttgctgcggggatttgatctttctgcctcctaacgttgttgcttctttgggtccaaatattg |
39879521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 550 - 651
Target Start/End: Complemental strand, 25912766 - 25912665
Alignment:
| Q |
550 |
tttttctgttgaaatcgtcccaatttgttgcggggatttgattattctgcctagtcatattgctgcttctttcggtccaaatattggtcctattgtcatt |
649 |
Q |
| |
|
||||| ||||||||||||||| |||| ||| ||||||||||| |||||||| | || |||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
25912766 |
tttttttgttgaaatcgtccccattttctgctgggatttgatttttctgcctcctaatgttgctgcttctttcagtgtaaatattggtcctattgtcatt |
25912667 |
T |
|
| Q |
650 |
tg |
651 |
Q |
| |
|
|| |
|
|
| T |
25912666 |
tg |
25912665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 307 - 364
Target Start/End: Complemental strand, 25913002 - 25912945
Alignment:
| Q |
307 |
tcgtcaacaacatatttgtcaactgcgtactttgtttcatttggagcagatcagcgtt |
364 |
Q |
| |
|
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|
|
| T |
25913002 |
tcgtcaacaacatgtttgtcaactgcgtactttctttcatttggagcagatcagcgtt |
25912945 |
T |
|
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