View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2176_low_81 (Length: 280)

Name: NF2176_low_81
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2176_low_81
NF2176_low_81
[»] chr4 (1 HSPs)
chr4 (1-262)||(17248418-17248679)
[»] chr5 (17 HSPs)
chr5 (3-262)||(31225918-31226177)
chr5 (3-262)||(31187601-31187860)
chr5 (1-244)||(41333011-41333254)
chr5 (1-233)||(41311242-41311474)
chr5 (1-233)||(41325101-41325333)
chr5 (3-262)||(31177538-31177797)
chr5 (1-233)||(41317037-41317269)
chr5 (3-253)||(41287205-41287455)
chr5 (10-262)||(41367199-41367451)
chr5 (1-262)||(41305349-41305610)
chr5 (66-232)||(41369940-41370106)
chr5 (1-226)||(41337818-41338043)
chr5 (1-233)||(41329078-41329310)
chr5 (102-202)||(41329492-41329592)
chr5 (140-214)||(41311681-41311755)
chr5 (140-213)||(41333403-41333476)
chr5 (91-147)||(41342496-41342552)
[»] chr3 (3 HSPs)
chr3 (21-113)||(22971932-22972024)
chr3 (21-112)||(22946386-22946477)
chr3 (21-112)||(22986259-22986350)
[»] chr8 (1 HSPs)
chr8 (21-112)||(23610199-23610290)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 17248679 - 17248418
Alignment:
Q  1 ttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctggaaggaggat 100  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||| |||||| ||||||||||||||||||||||||||||||||    
T  17248679 ttgaagctgagagtttcaaacctgaaaggttttttaatagcccaattgatttcaaaggcatgaatttcgaatacataccatttggtgctggaaggaggat 17248580  T
Q  101 ttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatgaagaatgaa 200  Q
    |||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17248579 ttgtccgggcattgcatttggcatacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatgaagaatgaa 17248480  T
Q  201 gatctagatatgaccgaatcatttgggattactctaagaagaaaaaatgacctgtgcttgat 262  Q
    ||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||    
T  17248479 gatctagatatgaccgagtcatttgggattacaataagaagaaaaaatgacctgtgcttgat 17248418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 3 - 262
Target Start/End: Original strand, 31225918 - 31226177
Alignment:
Q  3 gaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctggaaggaggattt 102  Q
    |||||||||||||| |||||||| |||||| | |||||| || |||||||| ||||||| ||||||||||||||||| || ||||||||||| || || |    
T  31225918 gaagctgagagttttaaacctgagaggtttctcaatagcacaattgatttcaaaggcacaaattttgaatacataccgttcggtgctggaagaagaatgt 31226017  T
Q  103 gtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatgaagaatgaaga 202  Q
    |||||||||| |||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||    
T  31226018 gtccaggcatggcatttggcttatccaacattgagctgcctcttgctcagttactttaccactttgattggaagcttcctaatggaatgaagaatgaaga 31226117  T
Q  203 tctagatatgaccgaatcatttgggattactctaagaagaaaaaatgacctgtgcttgat 262  Q
     ||||||||||| || ||||||||| || || || |||||||||||||||||||||||||    
T  31226118 actagatatgactgagtcatttgggctttctgtaggaagaaaaaatgacctgtgcttgat 31226177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 3 - 262
Target Start/End: Complemental strand, 31187860 - 31187601
Alignment:
Q  3 gaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctggaaggaggattt 102  Q
    |||||||||||||| |||||||| |||||| | |||||| || |||||||| ||||||| ||||||||||||||||| || ||||||||||| || || |    
T  31187860 gaagctgagagttttaaacctgagaggtttctcaatagcacaattgatttcaaaggcacaaattttgaatacataccgttcggtgctggaagaagaatgt 31187761  T
Q  103 gtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatgaagaatgaaga 202  Q
    |||||||||| |||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||    
T  31187760 gtccaggcatggcatttggcttatccaacattgagctgcctcttgctcagttactttaccactttgattggaagcttcctaatggaatgaagaatgaaga 31187661  T
Q  203 tctagatatgaccgaatcatttgggattactctaagaagaaaaaatgacctgtgcttgat 262  Q
     ||||||||||| || |||||||||||  || || |||||||| ||||||| ||||||||    
T  31187660 actagatatgactgagtcatttgggatggctataggaagaaaacatgacctatgcttgat 31187601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 41333011 - 41333254
Alignment:
Q  1 ttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctggaaggaggat 100  Q
    |||||||||||||||| |||||||| |||||| |||||||| || |||| ||| |||||||| | || |||| |||||||||||||||||||||||||||    
T  41333011 ttgaagctgagagttttaaacctgagaggtttgttaatagcacaattgaattcaaaggcacggacttcgaattcataccatttggtgctggaaggaggat 41333110  T
Q  101 ttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatgaagaatgaa 200  Q
     ||||| || |||||||||| | |||| ||||||||| | ||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||    
T  41333111 gtgtcccggaattgcatttgccctaccaaacattgagctacctcttgctcaattactttgccactttgattggaagcttcccaataaaatgaagaatgaa 41333210  T
Q  201 gatctagatatgaccgaatcatttgggattactctaagaagaaa 244  Q
    || |||||||||||||| ||||||||||||||| || |||||||    
T  41333211 gaactagatatgaccgagtcatttgggattactgtaggaagaaa 41333254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 41311242 - 41311474
Alignment:
Q  1 ttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctggaaggaggat 100  Q
    ||||||||||||| || |||||||| |||||| |||||||| || |||| ||| |||||||| | |||||||||||||||||||||||||||||||||||    
T  41311242 ttgaagctgagagatttaaacctgagaggtttgttaatagcacaattgaattcaaaggcacggactttgaatacataccatttggtgctggaaggaggat 41311341  T
Q  101 ttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatgaagaatgaa 200  Q
     ||||| || |||||||||| | |||| ||||||||| | ||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||||    
T  41311342 gtgtcccggaattgcatttgccctaccaaacattgagctacctcttgctcaattactttaccggtttgattggaagcttcccaataaaatgaagaatgaa 41311441  T
Q  201 gatctagatatgaccgaatcatttgggattact 233  Q
    || ||||||||| | || |||||||||||||||    
T  41311442 gaactagatatggctgagtcatttgggattact 41311474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 41325101 - 41325333
Alignment:
Q  1 ttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctggaaggaggat 100  Q
    |||| ||||| ||||| |||||||| |||||| |||||||  || |||||||| |||||||  | ||||||||||||||||||||||||||||| |||||    
T  41325101 ttgatgctgaaagttttaaacctgagaggtttgttaatagtccaattgatttcaaaggcacagactttgaatacataccatttggtgctggaagaaggat 41325200  T
Q  101 ttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatgaagaatgaa 200  Q
     ||||| || |||||||||| |||||||||| |||| ||||||||||||   ||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  41325201 gtgtcccggaattgcatttgccttacccaacgttgaattgcctcttgctagtttactttaccactttgattggaagcttcccaataaaatgaagaatgaa 41325300  T
Q  201 gatctagatatgaccgaatcatttgggattact 233  Q
    || |||||||||||||| |||||||||||||||    
T  41325301 gaactagatatgaccgagtcatttgggattact 41325333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 3 - 262
Target Start/End: Complemental strand, 31177797 - 31177538
Alignment:
Q  3 gaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctggaaggaggattt 102  Q
    |||||||||||||| ||||| || |||||| |||||||| || |||||||| |||| || || ||||| |||||||| || ||||||||||| || || |    
T  31177797 gaagctgagagttttaaacccgagaggtttgttaatagcacaattgatttcaaaggtacaaactttgagtacataccgttcggtgctggaagaagaatgt 31177698  T
Q  103 gtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatgaagaatgaaga 202  Q
    |||||||||| |||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||    
T  31177697 gtccaggcatggcatttggcttatccaacattgagctgcctcttgctcagttactttaccactttgattggaagcttcctaatggaatgaagaatgaaga 31177598  T
Q  203 tctagatatgaccgaatcatttgggattactctaagaagaaaaaatgacctgtgcttgat 262  Q
     ||||||||||| || ||||||||| || || ||  ||||||| ||||||| ||||||||    
T  31177597 actagatatgactgagtcatttgggcttgctgtagtaagaaaacatgacctatgcttgat 31177538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 41317037 - 41317269
Alignment:
Q  1 ttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctggaaggaggat 100  Q
    |||||||||||||||| |||||||| |||||| |||||||| || |||||||| |||||||| | || |||| |||||||||||||||||||||||||||    
T  41317037 ttgaagctgagagttttaaacctgagaggtttgttaatagcccaattgatttcaaaggcacggacttcgaattcataccatttggtgctggaaggaggat 41317136  T
Q  101 ttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatgaagaatgaa 200  Q
     |||||||| |||||||||| ||| |||||  ||||| ||||||||||| | |||||||| || |||||||||||||||||||||| |||||||||||||    
T  41317137 gtgtccaggtattgcatttgccttgcccaatgttgagctgcctcttgctaagttactttatcactttgattggaagcttcccaatggaatgaagaatgaa 41317236  T
Q  201 gatctagatatgaccgaatcatttgggattact 233  Q
    ||  | |||||||| || |||||||||||||||    
T  41317237 gaattggatatgactgagtcatttgggattact 41317269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 3 - 253
Target Start/End: Original strand, 41287205 - 41287455
Alignment:
Q  3 gaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctggaaggaggattt 102  Q
    |||||||||| ||||||||| || |||||| |||||||  || |||||||| | |||||  | || |||||||||||||||||||||||||||||||| |    
T  41287205 gaagctgagaatttcaaacccgagaggtttgttaatagtccaattgatttcaatggcacagacttcgaatacataccatttggtgctggaaggaggatgt 41287304  T
Q  103 gtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatgaagaatgaaga 202  Q
    | ||||||||||| || ||| |||||||| ||||| | ||||||||| |||||||||| || |||||||||||||||| ||||| |||||||  ||||||    
T  41287305 gcccaggcattgccttcggcatacccaacgttgagcttcctcttgctgaattactttatcactttgattggaagcttctcaatggaatgaagtgtgaaga 41287404  T
Q  203 tctagatatgaccgaatcatttgggattactctaagaagaaaaaatgacct 253  Q
     || |||||||| || ||||||||||||||| || |||||||| |||||||    
T  41287405 acttgatatgactgagtcatttgggattactgtaggaagaaaacatgacct 41287455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 10 - 262
Target Start/End: Original strand, 41367199 - 41367451
Alignment:
Q  10 agagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctggaaggaggatttgtccagg 109  Q
    ||||||| || ||||| || ||| ||||||||  | |||||||| |||||||  | ||||||||||||||||||||||||||||||||||| ||||  ||    
T  41367199 agagttttaagcctgagagatttcttaatagccgaattgatttcaaaggcacagactttgaatacataccatttggtgctggaaggaggatgtgtctggg 41367298  T
Q  110 cattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatgaagaatgaagatctagat 209  Q
     |||||||||| |||||||||||| ||| | ||| | ||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||  |||||    
T  41367299 tattgcatttgccttacccaacatagagctacctttagctcagttactttaccattttgattggaagcttccaaatggaatgaagaatgaagaattagat 41367398  T
Q  210 atgaccgaatcatttgggattactctaagaagaaaaaatgacctgtgcttgat 262  Q
    ||||| || ||||||||| || |  || |||||||| ||||| | ||||||||    
T  41367399 atgacggagtcatttgggcttgcagtaggaagaaaacatgacttatgcttgat 41367451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 41305349 - 41305610
Alignment:
Q  1 ttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctggaaggaggat 100  Q
    |||||||||||||||| ||||| || |||||| ||||||||||| |||||||| |||||||  | |||||||||||||||||||||||||||||||||||    
T  41305349 ttgaagctgagagttttaaacccgagaggtttgttaatagctcaattgatttcaaaggcacagactttgaatacataccatttggtgctggaaggaggat 41305448  T
Q  101 ttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatgaagaatgaa 200  Q
     ||||| ||||||||||||| |||| | ||  ||||  | ||||||||| ||||||||||  | |||||||||||||||||||| | |||||   || ||    
T  41305449 gtgtccgggcattgcatttgccttatcaaatgttgaacttcctcttgctgaattactttataactttgattggaagcttcccaacggaatgagccatcaa 41305548  T
Q  201 gatctagatatgaccgaatcatttgggattactctaagaagaaaaaatgacctgtgcttgat 262  Q
    || || ||||||||||| ||||||||| ||| | || |||||||| | ||||| || |||||    
T  41305549 gaacttgatatgaccgagtcatttgggcttagtgtaggaagaaaacacgacctatgtttgat 41305610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 66 - 232
Target Start/End: Original strand, 41369940 - 41370106
Alignment:
Q  66 tttgaatacataccatttggtgctggaaggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccatt 165  Q
    ||||||||||||||||||| ||| || |||||||| ||||||||||||   ||||||||||| ||| |||||||||||||||||   ||||||||||| |    
T  41369940 tttgaatacataccatttgatgcagggaggaggatgtgtccaggcattatgtttggcttacctaacgttgagttgcctcttgctagtttactttaccact 41370039  T
Q  166 ttgattggaagcttcccaatgaaatgaagaatgaagatctagatatgaccgaatcatttgggattac 232  Q
    |||||||||||||||||||||||||||||||||||||  | |||||||| |||||||||||||||||    
T  41370040 ttgattggaagcttcccaatgaaatgaagaatgaagaattggatatgactgaatcatttgggattac 41370106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 41337818 - 41338043
Alignment:
Q  1 ttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctggaaggaggat 100  Q
    |||||||||||||||| |||||||| |||||| ||||||||||| |||||||| |||||||  | |||||||  |||||||||||||||||||| |||||    
T  41337818 ttgaagctgagagttttaaacctgagaggtttgttaatagctcaattgatttcaaaggcacagactttgaattaataccatttggtgctggaagaaggat 41337917  T
Q  101 ttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatgaagaatgaa 200  Q
     |||||||| |||||||||| ||| |||||  ||||| ||||||||||| | || ||||| || ||||||||||| ||||| |||| |||||   || ||    
T  41337918 gtgtccaggtattgcatttgccttgcccaatgttgagctgcctcttgctaagttgctttatcactttgattggaaacttccaaatggaatgagccatcaa 41338017  T
Q  201 gatctagatatgaccgaatcatttgg 226  Q
    || || |||||||| |||||||||||    
T  41338018 gaacttgatatgactgaatcatttgg 41338043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 41329078 - 41329310
Alignment:
Q  1 ttgaagctgagagtttcaaacctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctggaaggaggat 100  Q
    |||||||||||||||| |||||||| |||||| |||||||  || |||||||| |||||||| | || |||| ||||||||||||||||||||| |||||    
T  41329078 ttgaagctgagagttttaaacctgagaggtttgttaatagtccaattgatttcaaaggcacggacttcgaattcataccatttggtgctggaagaaggat 41329177  T
Q  101 ttgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatgaagaatgaa 200  Q
     |||||||| ||| |||||| | |||||||  ||||| ||||||||||| | |||||||| || |||||||||||||||||||||| |||||   || ||    
T  41329178 gtgtccaggtatttcatttgccatacccaatgttgagctgcctcttgctaagttactttatcactttgattggaagcttcccaatggaatgagccatcaa 41329277  T
Q  201 gatctagatatgaccgaatcatttgggattact 233  Q
    || || |||||||| || |  ||||||||||||    
T  41329278 gaacttgatatgactgagttttttgggattact 41329310  T

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Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 41329492 - 41329592
Alignment:
Q  102 tgtccaggcattgcatttggcttacccaacattgagttgcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatgaagaatgaag 201  Q
    |||||| ||||||||||||| ||| ||||  ||||  ||| ||||||| ||||||||||  | |||||||| |||||| |||||| |||||| |||||||    
T  41329492 tgtccaagcattgcatttggtttagccaatgttgaactgcgtcttgctgaattactttatgactttgattgaaagctttccaatggaatgaataatgaag 41329591  T
Q  202 a 202  Q
    |    
T  41329592 a 41329592  T

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Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 214
Target Start/End: Original strand, 41311681 - 41311755
Alignment:
Q  140 gcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatgaagaatgaagatctagatatgac 214  Q
    |||||||||| ||||| ||||  | |||||||| ||||||||||||| |||||| |||||||| || ||||||||    
T  41311681 gcctcttgctgaattattttatgaatttgattgaaagcttcccaatggaatgaataatgaagaacttgatatgac 41311755  T

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Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 41333403 - 41333476
Alignment:
Q  140 gcctcttgctcaattactttaccattttgattggaagcttcccaatgaaatgaagaatgaagatctagatatga 213  Q
    |||||||||| ||||| ||||  | |||||||| ||||||||||||| |||||| |||||||| || |||||||    
T  41333403 gcctcttgctgaattattttatgaatttgattgaaagcttcccaatggaatgaataatgaagaacttgatatga 41333476  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 147
Target Start/End: Original strand, 41342496 - 41342552
Alignment:
Q  91 gaaggaggatttgtccaggcattgcatttggcttacccaacattgagttgcctcttg 147  Q
    |||||||||| | | ||||||||| ||||||||||| |||| |||||||||| ||||    
T  41342496 gaaggaggatgtcttcaggcattgtatttggcttactcaacgttgagttgccacttg 41342552  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 22972024 - 22971932
Alignment:
Q  21 cctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctggaaggaggatttgtccaggcatt 113  Q
    |||||||| ||| || |||| ||  |||||||| |||| || |||||||| ||||| ||||||||||||||||| || |||||||||||||||    
T  22972024 cctgaaagatttattgatagttctcttgatttcaaaggaacaaattttgagtacattccatttggtgctggaagaagaatttgtccaggcatt 22971932  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 22946477 - 22946386
Alignment:
Q  21 cctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctggaaggaggatttgtccaggcat 112  Q
    |||||||| ||| || |||| || ||||||||| |||| || |||||||| ||||| ||||||||||| |||||||| |||||||| |||||    
T  22946477 cctgaaagatttattgatagttctgttgatttcaaaggaacaaattttgagtacattccatttggtgccggaaggagaatttgtccgggcat 22946386  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 22986350 - 22986259
Alignment:
Q  21 cctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctggaaggaggatttgtccaggcat 112  Q
    ||||| |||||| || |||| ||  |||||||| |||| || |||||||| ||||| |||||||||||||||||||| |||||||| |||||    
T  22986350 cctgagaggtttattgatagttctattgatttcaaaggaactaattttgagtacattccatttggtgctggaaggagaatttgtcctggcat 22986259  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 23610290 - 23610199
Alignment:
Q  21 cctgaaaggttttttaatagctcagttgatttcgaaggcacgaattttgaatacataccatttggtgctggaaggaggatttgtccaggcat 112  Q
    |||||||||||| || |||||||  ||||||||  ||| || |||||||| | ||| |||||||||||||| ||||| |||||||| |||||    
T  23610290 cctgaaaggtttattgatagctctattgatttctcaggaactaattttgagttcattccatttggtgctggtaggagaatttgtcccggcat 23610199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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