View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_low_82 (Length: 267)
Name: NF2176_low_82
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_low_82 |
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| [»] chr5 (6 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 37222571 - 37222322
Alignment:
| Q |
18 |
gaaggtgtcatagaatcatctggtgacaatttagacttttcttctccattcttcattcgaaagtatctaacatatatacaaagtaataataacagaacca |
117 |
Q |
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| T |
37222571 |
gaaggtgtcatagaatcatctggtgacaatttagacttttcttctccattcttcattcgaaagtatctaacatatatacaaagtaataataacagaacca |
37222472 |
T |
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| Q |
118 |
tgcataatcctccaatagatattccagctgtacctaaacttcttgctaaatgacctgcttatatatatagaaattaaatcttagaggcacttagctttct |
217 |
Q |
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| T |
37222471 |
tgcataatcctccaatagatattccagctgtacctaaacttcttgctaaatgacctgcttatatatatagaaattaaatcttagaggcacttagctttct |
37222372 |
T |
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| Q |
218 |
ttgaattctcatatgattaatgtgaacaacatgcaaaaataaatagtcat |
267 |
Q |
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| T |
37222371 |
ttgaattctcatatgattaatgtgaacaacatgcaaaaataaatagtcat |
37222322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 37216547 - 37216297
Alignment:
| Q |
18 |
gaaggtgtcatagaatcatctggtgacaatttagacttttcttctccattcttcattcgaaagtatctaacatatatacaaagtaataataacagaacca |
117 |
Q |
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| T |
37216547 |
gaaggtgtcatagaatcttctggtggaaatttagactcttcttctccattcttctttcgaaagtatctaacatatatacaaagtaataataacagaacca |
37216448 |
T |
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| Q |
118 |
tgcataatcctccaatagatattccagctgtacctaaacttcttgctaaatgacctgcttatata--tatagaaattaaa--tcttagaggcacttagct |
213 |
Q |
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| T |
37216447 |
tgcatgatcctccaatagatattccagctataactaaaattctgtctaaatcacctgcttatatatatatagaaattaaaggtcagagaggcacttagct |
37216348 |
T |
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| Q |
214 |
ttctttgaattctcatatgattaatgtgaacaacatgcaaaaataaatagtcat |
267 |
Q |
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| T |
37216347 |
ttctttgaattctcatatgattaacgtg---aacatgcaaaaataaatagtcat |
37216297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 267
Target Start/End: Complemental strand, 37227985 - 37227738
Alignment:
| Q |
18 |
gaaggtgtcatagaatcatctggtgacaatttagacttttcttctccattcttcattcgaaagtatctaacatatatacaaagtaataataacagaacca |
117 |
Q |
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||||||| ||| ||||| ||||||| ||||||||||| |||||||||||||||| | ||||||||||||||||||||||||| | ||||| |||||||| |
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| T |
37227985 |
gaaggtgacattgaatcttctggtggcaatttagactcttcttctccattcttcttgcgaaagtatctaacatatatacaaattgctaatagcagaacca |
37227886 |
T |
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| Q |
118 |
tgcataatcctccaatagatattccagctgtacctaaacttcttgctaaatgacctgcttatata--tatagaaattaaa--tcttagaggcacttagct |
213 |
Q |
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| T |
37227885 |
tgcatactcctcgaatacatattccagcagcaactaaacttctagctaagtgacctgattatatatatatagaaattaaagttcagagaggcacttagct |
37227786 |
T |
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| Q |
214 |
ttctttgaattctcatatgattaatgtgaacaacatgcaaaaataaatagtcat |
267 |
Q |
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| T |
37227785 |
ttctttgaattctcatatgact-atg-----aacatgcaaaaataaatagtcat |
37227738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 233
Target Start/End: Complemental strand, 37231474 - 37231258
Alignment:
| Q |
18 |
gaaggtgtcatagaatcatctggtgacaatttagacttttcttctccattcttcattcgaaagtatctaacatatatacaaagtaataataacagaacca |
117 |
Q |
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||||||| ||||||||| ||||||| ||||||||||| |||||||||||||| | ||||||||||||||||||||||||| | ||||| |||||||| |
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| T |
37231474 |
gaaggtgacatagaatcttctggtggcaatttagact---cttctccattcttcttgcgaaagtatctaacatatatacaaattgctaatagcagaacca |
37231378 |
T |
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| Q |
118 |
tgcataatcctccaatagatattccagctgtacctaaacttcttgctaaatgacctg--cttatatatatagaaattaaa--tcttagaggcacttagct |
213 |
Q |
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| T |
37231377 |
tgcatactcctcgaatacatattccagcagcaactaaacttctagctaagtgacctgattttatatatatagaaattaaagttcagagaggcacttagct |
37231278 |
T |
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| Q |
214 |
ttctttgaattctcatatga |
233 |
Q |
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| T |
37231277 |
ttctttgaattttcatatga |
37231258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 192
Target Start/End: Complemental strand, 37441396 - 37441286
Alignment:
| Q |
73 |
ttcgaaagtatctaacatatatacaaagtaataataacagaaccatgcataatcctccaatagatattccagctgtacctaaacttcttgctaaatgacc |
172 |
Q |
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| T |
37441396 |
ttcgaaagtatctagtatatatacaaattgctaataacagaaccatgcatattcctccgat---------aacagtagctaaactcctagctaaatgacc |
37441306 |
T |
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| Q |
173 |
tgcttatatatatagaaatt |
192 |
Q |
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| T |
37441305 |
tgcttatatagatagaaatt |
37441286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 37386180 - 37386230
Alignment:
| Q |
142 |
cagctgtacctaaacttcttgctaaatgacctgcttatatatatagaaatt |
192 |
Q |
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| T |
37386180 |
cagcagtagctaaactcctagctaaatgacctgcttatatagatagaaatt |
37386230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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