View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2176_low_91 (Length: 254)
Name: NF2176_low_91
Description: NF2176
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2176_low_91 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 8674987 - 8675229
Alignment:
| Q |
1 |
aatgttgagacatgggttagcactgccttaaccgacgctagtagttgtgtgcaatcgttccctggtcatagaatgagcaagagggttgcgacgattaaga |
100 |
Q |
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| T |
8674987 |
aatgttgagacatgggttagcactgccttaaccgacgctagtagttgtgtgcaatcgttccctggtcatagaatgagcaagagggttgcgacgattaagg |
8675086 |
T |
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| Q |
101 |
ttaaggcgaagaatgttgcagaagttactagtaacgcacttgctttgtttcaaagttatgctactaggtatcgacaagcag---cggctagaaccgtcaa |
197 |
Q |
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| T |
8675087 |
ttaaggcgaagaatgttgcagaagtaactagtaatgcacttgctttgtttcaaagttatgctacaaggtatcgacaagcagccacggctagaactgtcaa |
8675186 |
T |
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| Q |
198 |
gaagccatgaaaaacttttaaatcataacttatcttatcaccc |
240 |
Q |
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| T |
8675187 |
gaagccatgaaaaacttttaaatcataacttattttatcaccc |
8675229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 8687479 - 8687241
Alignment:
| Q |
1 |
aatgttgagacatgggttagcactgccttaaccgacgctagtagttgtgtgcaatcgttccctggtcatagaatgagcaagagggttgcgacgattaaga |
100 |
Q |
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| T |
8687479 |
aatgttgagacatgggttagcactgccttaaccgacgctagtagttgtgtgcaatcgttccctggtcatagaatgagcaaaagagttgcgacgattaagg |
8687380 |
T |
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| Q |
101 |
ttaaggcgaagaatgttgcagaagttactagtaacgcacttgctttgtttcaaagttatgctactaggtatcgacaagcagcggctagaaccgtcaagaa |
200 |
Q |
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| T |
8687379 |
tgaaggcgaagaatgttgcagaagtaactagtaatgcacttgctttgtttcaaagttatgctactaggtatcgacaagcagcggctagaaccgtcaagaa |
8687280 |
T |
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| Q |
201 |
gccatgaaaaacttttaaatcataacttatcttatcaccc |
240 |
Q |
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| T |
8687279 |
gccatgaaaaac-ttgaaatcataccttattttatcaccc |
8687241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 8696048 - 8695834
Alignment:
| Q |
1 |
aatgttgagacatgggttagcactgccttaaccgacgctagtagttgtgtgcaatcgttccctggtcatagaatgagcaagagggttgcgacgattaaga |
100 |
Q |
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| T |
8696048 |
aatgttgagacatgggttagcactgccttaaccgacgctagtagttgtgtgcaatcgttccctggtcatagaatgagcaagagggttgcgacgattaagg |
8695949 |
T |
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| Q |
101 |
ttaaggcgaagaatgttgcagaagttactagtaacgcacttgctttgtttcaaagttatgctactaggtatcgacaagcagcggctagaaccgtcaagaa |
200 |
Q |
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| T |
8695948 |
tgaaggcgaagaatgttgcagaagttactagtaacgcacttgctttgtttcaaagttatgctacaaggtatcgacaagaagcagctagaacttccaagaa |
8695849 |
T |
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| Q |
201 |
gccatgaaaaacttt |
215 |
Q |
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| T |
8695848 |
gccatgaaaatcttt |
8695834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 8693218 - 8693459
Alignment:
| Q |
1 |
aatgttgagacatgggttagcactgccttaaccgacgctagtagttgtgtgcaatcgttccctggtcatagaatgagcaagagggttgcgacgattaaga |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
8693218 |
aatgttgagacatgggttagcactgccttaaccgatgctagtagttgtgtgcaatcgttccctggtcatagaatgagcaatagtgttgcgacgattaagg |
8693317 |
T |
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| Q |
101 |
ttaaggcgaagaatgttgcagaagttactagtaacgcacttgctttgtttcaaagttatgctactaggtatcgacaagcag---cggctagaaccgtcaa |
197 |
Q |
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| T |
8693318 |
ttaaggcgaagaatgttgcagaagtaactagtaatgcacttgctttgtttcaaagttatgctacaaggtatcgacaagcagccacggctagaacttcgaa |
8693417 |
T |
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| Q |
198 |
gaagccatgaaaaacttttaaatcataacttatcttatcaccc |
240 |
Q |
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| T |
8693418 |
gaagccatgaaaaac-tttaaatcataccttattttgtcaccc |
8693459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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