View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2178_high_11 (Length: 242)
Name: NF2178_high_11
Description: NF2178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2178_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 3837728 - 3837953
Alignment:
| Q |
1 |
tacattcaaagaatcctatataaaacaaaacacacgctgttacacaatttttacaagtcaacaaataaaacacttgccacacttcaatgatagattcatt |
100 |
Q |
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| T |
3837728 |
tacattcaaagaatcctatataaaacaaaacacacgctgttacacaatttttacaagtcaacaagtaaaacacttgccacacttcaatgatagattcatt |
3837827 |
T |
|
| Q |
101 |
ggtact-aaactgtaccagttcaaaagctcgttgatagcacgtagctgccttcttagcataataatccatttcgtcagggtaaccgctagatgccaaggt |
199 |
Q |
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| T |
3837828 |
ggtactaaaactgtaccaattcaaaagctcgttgatagcacatagctgccttcttagcataataatccatttcgtcagggtcactgctagatgccaagtt |
3837927 |
T |
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| Q |
200 |
acggcaagcatgtcccaggtaccaaa |
225 |
Q |
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| T |
3837928 |
acggcaagaatatcccaggtaccaaa |
3837953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 166
Target Start/End: Original strand, 3831593 - 3831719
Alignment:
| Q |
46 |
aatttttacaagtcaacaaataaaacacttgccacacttcaatgatagattcattggtact------aaactgtaccagttcaaaagctcgttgatagca |
139 |
Q |
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||||||||||||||||||| || ||||||| |||||||||||||||| ||||||||||| | ||| ||||||| ||||||||| |||||||||| |
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| T |
3831593 |
aatttttacaagtcaacaagtacaacactttccacacttcaatgatacattcattggtattgaacaaaaattgtaccaaatcaaaagcttgttgatagca |
3831692 |
T |
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| Q |
140 |
cgtagctgccttcttagcataataatc |
166 |
Q |
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| | ||||||||| | ||||||||| |
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| T |
3831693 |
tgcaattgccttctttgaataataatc |
3831719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 8587287 - 8587336
Alignment:
| Q |
50 |
tttacaagtcaacaaataaaacacttgccacacttcaatgatagattcat |
99 |
Q |
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||||||||||||| | ||||| |||| |||||||||||||||| |||||| |
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| T |
8587287 |
tttacaagtcaacgagtaaaatacttcccacacttcaatgatacattcat |
8587336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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