View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2178_high_4 (Length: 349)
Name: NF2178_high_4
Description: NF2178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2178_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 31061523 - 31061858
Alignment:
| Q |
1 |
atgaaagccaaaaagatcaagtatctcatcatccgaaaaaccaaataaaatcataaaatatctgaggagaattagagagcaatgactcatcaatagcatc |
100 |
Q |
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| T |
31061523 |
atgaaagccaaaaagatcaagtatctcatcatccgaaaaaccaaataaaatcataaaatatctgaggagaatcagagagcaatgattcatcaatagcatc |
31061622 |
T |
|
| Q |
101 |
actaagatactcctaattttgattacctgcctcaccttgtggagctacctcaataaaattattaaatcaagcaaagtggatatatatgcataattgtctt |
200 |
Q |
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| T |
31061623 |
actaagatactcctaattttgattacatgcctcaccttgtggagctacctcaataaaattattaaatcaagcaaagtggatatatatgcataattgtctt |
31061722 |
T |
|
| Q |
201 |
ctttgcttgattgaactcccgttaattgaactgcttgaccatcctgcatatcatctaagatcattctgttccaaatagttacaaaatatcatcaatgtca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31061723 |
ctttgcttgattgaactcccgttaattgaactgcttgaccatcctgcatatcatctaagatcattctgttccaaatagttagaaaatatcatcaatgtca |
31061822 |
T |
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| Q |
301 |
tttgcatcagtcaaagcaacgatagtgttaattagt |
336 |
Q |
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||||||| |||||||||||||||||||||||||||| |
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| T |
31061823 |
tttgcattagtcaaagcaacgatagtgttaattagt |
31061858 |
T |
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