View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2178_low_10 (Length: 291)
Name: NF2178_low_10
Description: NF2178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2178_low_10 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 45957180 - 45956920
Alignment:
| Q |
18 |
ggaagttagtgctagctacggtaaaataaacgattcctgtgtcaggatctacatccaaaccatcagcaaacattgtagaatttgcttgggcaggtccaac |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45957180 |
ggaagttagtgctagctacggtaaaataaacgattcctgtgtcaggatctacatccaaaccatcagcaaacattgtagaatttgcttgggcaggtccaac |
45957081 |
T |
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| Q |
118 |
taactgggttacattccctccatcaggactaaccttaacaagccccaaataagcatcagctacgtacaaatcgcctgtctgatgattgaaacccaatcct |
217 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45957080 |
taactgtgttacattccctccatcgggactaaccttaacaagccccaaataagcatcagctacgtacaaatcgcctgtctgatgattgaaacccaatcct |
45956981 |
T |
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| Q |
218 |
aatggccttccacatgttgcttggactgctgagaagtcagaaagtccatcacagaccgtct |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45956980 |
aatggccttccacatgttgcttggactgctgagaagtcagaaagtccatcacagaccgtct |
45956920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 23 - 270
Target Start/End: Complemental strand, 45963962 - 45963715
Alignment:
| Q |
23 |
ttagtgctagctacggtaaaataaacgattcctgtgtcaggatctacatccaaaccatcagcaaacattgtagaatttgcttgggcaggtccaactaact |
122 |
Q |
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||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||||| ||||| | ||||||||||| | |
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| T |
45963962 |
ttagtgctagctatggtaaaataaacgattccagtgtccggatctacatccaaaccatcggcaaacatagtagaattggcttgtgtcggtccaactaatt |
45963863 |
T |
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| Q |
123 |
gggttacattccctccatcaggactaaccttaacaagccccaaataagcatcagctacgtacaaatcgcctgtctgatgattgaaacccaatcctaatgg |
222 |
Q |
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| T |
45963862 |
gagttgcattcccaccattggggccaaccttaacaagtccaaaataagcatcagctacatataaatcgtttgtttgatgattgaaacccaatcctaaagg |
45963763 |
T |
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| Q |
223 |
ccttccacatgttgcttggactgctgagaagtcagaaagtccatcaca |
270 |
Q |
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| T |
45963762 |
tcttccacatattgcttggactactgagaagtcagcaaggccatcaca |
45963715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 45979017 - 45978757
Alignment:
| Q |
18 |
ggaagttagtgctagctacggtaaaataaacgattcctgtgtcaggatctacatccaaaccatcagcaaacattgtagaatttgcttgggcaggtccaac |
117 |
Q |
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|||| ||||||||||||| ||||||||||| |||||| |||| || ||||||||||||||||||||| | | |||||||| ||||| | |||||||| |
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| T |
45979017 |
ggaatttagtgctagctatggtaaaataaatgattccagtgtttgggtctacatccaaaccatcagcagagacagtagaattggcttgtgtcggtccaac |
45978918 |
T |
|
| Q |
118 |
taactgggttacattccctccatcaggactaaccttaacaagccccaaataagcatcagctacgtacaaatcgcctgtctgatgattgaaacccaatcct |
217 |
Q |
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||| || ||| ||||||| |||| || | |||||||||||| || ||||||||||||||||| || |||||| ||| ||||||||||||||||||||| |
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| T |
45978917 |
taattgagttgcattcccaccattggggccaaccttaacaagtccaaaataagcatcagctacatataaatcgtttgtttgatgattgaaacccaatcct |
45978818 |
T |
|
| Q |
218 |
aatggccttccacatgttgcttggactgctgagaagtcagaaagtccatcacagaccgtct |
278 |
Q |
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|||||||| |||||||||| ||||| |||||||| |||| ||| |||||||||||||||| |
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| T |
45978817 |
aatggcctcccacatgttggttggagcgctgagaattcagcaaggccatcacagaccgtct |
45978757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 272
Target Start/End: Complemental strand, 45972841 - 45972587
Alignment:
| Q |
18 |
ggaagttagtgctagctacggtaaaataaacgattcctgtgtcaggatctacatccaaaccatcagcaaacattgtagaatttgcttgggcaggtccaac |
117 |
Q |
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|||| ||||||||||||| |||||||||||||||||| |||| | |||||||||||||||| |||||||| ||||| || | ||| ||||||||||| |
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| T |
45972841 |
ggaatttagtgctagctatggtaaaataaacgattccagtgtttgagtctacatccaaaccattagcaaacacagtagagttagattgtgcaggtccaac |
45972742 |
T |
|
| Q |
118 |
taactgggttacattccctccatcaggactaaccttaacaagccccaaataagcatcagctacgtacaaatcgcctgtctgatgattgaaacccaatcct |
217 |
Q |
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||| |||||| | |||||||||| || | |||||| |||||||| ||||| |||| ||| | |||||||| ||||| ||||||||||||||||||||| |
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| T |
45972741 |
taattgggttgctttccctccattggggccaacctttacaagcccgtaataaccatcggctgcatacaaatctcctgtttgatgattgaaacccaatcct |
45972642 |
T |
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| Q |
218 |
aatggccttccacatgttgcttggactgctgagaagtcagaaagtccatcacaga |
272 |
Q |
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||||||||||||||| ||||||||| ||||||||| |||| ||||||||||| |
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| T |
45972641 |
aatggccttccacatattgcttggatatttgagaagtcggaaaatccatcacaga |
45972587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 165 - 272
Target Start/End: Original strand, 45871816 - 45871923
Alignment:
| Q |
165 |
aataagcatcagctacgtacaaatcgcctgtctgatgattgaaacccaatcctaatggccttccacatgttgcttggactgctgagaagtcagaaagtcc |
264 |
Q |
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|||||||||| |||| ||||||||||||||||||| |||||||| | ||||||||||||| |||||||| | ||||| ||||||||||||| ||| || |
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| T |
45871816 |
aataagcatcggctatatacaaatcgcctgtctgattattgaaactccatcctaatggcctcccacatgtcggttggagtgctgagaagtcatcaaggcc |
45871915 |
T |
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| Q |
265 |
atcacaga |
272 |
Q |
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|||||||| |
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| T |
45871916 |
atcacaga |
45871923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 45871693 - 45871752
Alignment:
| Q |
18 |
ggaagttagtgctagctacggtaaaataaacgattcctgtgtcaggatctacatccaaac |
77 |
Q |
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|||| |||| |||||||| |||||||||||||||||| |||| || ||||||||||||| |
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| T |
45871693 |
ggaatttagcgctagctatggtaaaataaacgattccagtgtttgggtctacatccaaac |
45871752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 299223 - 299347
Alignment:
| Q |
18 |
ggaagttagtgctagctacggtaaaataaacgattcctgtgtcaggatctacatccaaaccatcagcaaacattgtagaatttgcttgggcaggtccaac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||| |
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| T |
299223 |
ggaagttagtgctagctacggtaaaataaacgattccagtgtcaggatctacatccaaaccatcagcaaacatagtagaattgccttgtgcaggtccaac |
299322 |
T |
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| Q |
118 |
taactgggttacattccctccatca |
142 |
Q |
| |
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||| |||||||||||| | |||||| |
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| T |
299323 |
taattgggttacattctcgccatca |
299347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 24143090 - 24143135
Alignment:
| Q |
28 |
gctagctacggtaaaataaacgattcctgtgtcaggatctacatcc |
73 |
Q |
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| T |
24143090 |
gctagcttccgtaaaataaacgattccagtgttaggatctacatcc |
24143135 |
T |
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