View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2178_low_14 (Length: 260)
Name: NF2178_low_14
Description: NF2178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2178_low_14 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 29001972 - 29002200
Alignment:
| Q |
11 |
cacagaaaaaatgcagcaaggaggactattattccttgacagattctgatgataaagttaaagactttgaattgttcttcaacaaattcatcactgatcc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29001972 |
cacagaaaaaatgcagcaaggaggactatt---ccttgacagattctgatgataaagttaaagactttgaattgttcttcaacaaattcatcactgatcc |
29002068 |
T |
|
| Q |
111 |
aatacaggaaaaacgctgcaacgattataactccccggattccagcgataaaggtgatgatgacagtttggaagcaacatggaaagctataatggaagga |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29002069 |
aatacaggaaaaacgctgcaacgattataactccccggattccggcgataaaggtgatgatgacagtttggaagcaacatggaaagctataatggaagga |
29002168 |
T |
|
| Q |
211 |
caggagaaaacaaagaagccatatctaaagaa |
242 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |
|
|
| T |
29002169 |
caagagaaaacaaagaagccatatctaaagaa |
29002200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 45 - 242
Target Start/End: Original strand, 28962280 - 28962477
Alignment:
| Q |
45 |
cttgacagattctgatgataaagttaaagactttgaattgttcttcaacaaattcatcactgatccaatacaggaaaaacgctgcaacgattataactcc |
144 |
Q |
| |
|
|||| |||||||||| || |||||||||||||| ||| |||| ||||||||||||| ||||||| || ||||||| | |||||||||||||||| |
|
|
| T |
28962280 |
cttgccagattctgacgacaaagttaaagacttcagattattctgcaacaaattcatcgatgatccatcaccggaaaaatgttgcaacgattataacttg |
28962379 |
T |
|
| Q |
145 |
ccggattccagcgataaaggtgatgatgacagtttggaagcaacatggaaagctataatggaaggacaggagaaaacaaagaagccatatctaaagaa |
242 |
Q |
| |
|
||||| || | ||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||| |||| ||||| |
|
|
| T |
28962380 |
ccggactcaggtgataaaggtgatgatgacagtttagaagcaacatggaaagcaataatggaagcacaggagaaaacaaagaagccacatctgaagaa |
28962477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 28962206 - 28962262
Alignment:
| Q |
67 |
gttaaagactttgaattgttcttcaacaaattcatcactgatccaatacaggaaaaa |
123 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||| || | ||||||| |
|
|
| T |
28962206 |
gttaaagactctgaattgttccacaacaaattcatcactgatccgattccggaaaaa |
28962262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University