View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2178_low_2 (Length: 513)
Name: NF2178_low_2
Description: NF2178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2178_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 16 - 502
Target Start/End: Original strand, 35526153 - 35526637
Alignment:
| Q |
16 |
gctcccacaatgaagaagaaataaggaaatcccatgacctcgtcacctttatgtcacaaccaattccgcagcactaagtgccaaagattgaaggaacttg |
115 |
Q |
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| T |
35526153 |
gctcccacaatgaagaagaaataaggaaatcccatgacctcgtcacctttatgtcacaaccaattccgcagcactaagtgccaaagattgaaggaacttg |
35526252 |
T |
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| Q |
116 |
ttgccatataacaaaggatcaaggggaagaaccccttcaggatcttccaattcctccagcatacgcagtctccgcaatacaacggatttaaccaccagat |
215 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35526253 |
ttgccata--acaaaggatcaaggggaagaaccccttcaggatcctccaattcctccggcatacgcagtctccgcaatacaacggatttaaccaccagat |
35526350 |
T |
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| Q |
216 |
taacatctactgtatccattttgattcttggtattttacattccaaatccataagtcaaattccagccaaatagaaacacttttgatgaaaaatttccca |
315 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35526351 |
taacatctactgcatccattttgattcttggtattttacattccaaatccataagtcaaattccagccaaatagaaacacttttgatgaaaaatttccca |
35526450 |
T |
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| Q |
316 |
taacaaagctactctaaatgtaccaaagctgtttgtagttgtaatnnnnnnntgtgccaaagctgtccaattcaaatcagagaaaataacaaaagagaaa |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35526451 |
taacaaagctactctaaatgtaccaaagctgtttgtagttgtactaaaaaaatgcgccaaagctgtccaattcaaatcagagaaaataaccaaagagaac |
35526550 |
T |
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| Q |
416 |
acatgaacagaccaatgtcataaaatcataacagcaaagagacaataaataagagaatcacataaataaatattggcattcatctca |
502 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
35526551 |
acatgaacagaccaatgtcataaaatcataacagtaaagagacaataaataagagaaccacgtaaataaatattggcattcatctca |
35526637 |
T |
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