View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2178_low_3 (Length: 409)
Name: NF2178_low_3
Description: NF2178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2178_low_3 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 24 - 398
Target Start/End: Original strand, 31939861 - 31940251
Alignment:
| Q |
24 |
gtgtagaaaccatatttctataaactcacttcatgggatgctcttttgttgnnnnnnnaaacaaaccaaaatgagatttatattaacacaataaagggga |
123 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31939861 |
gtgtagaaaacatatttctataaactcacttcatgggatgctctcttgttgtttttttaaacaaatcaaaatgagatttatattaacacaataaagggga |
31939960 |
T |
|
| Q |
124 |
cccccgccgcacaaggtgc----gctctcttgttgtttgatttttggcattggatgatggtcattttatgatttttattctctagttgcattgtt----- |
214 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31939961 |
cccccgccgcacaaggtgtatgtgctctcttgttgtttgatttttggcattggatgatggtcattttatgatttttattctctagttgcattgtttggtt |
31940060 |
T |
|
| Q |
215 |
-------tgagtcacttttcttgcgtcccaatgctctgctatcatgataattgtaaagttagataaaagcatggtgggaggcaaattcaacgtggtaaca |
307 |
Q |
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| T |
31940061 |
acatgtttgagtcacttttcttgcgtcccaatgctctgctatcgtgataattgtgaagttagataaaagcatggtgggaggcaaattcaacgtgctaaca |
31940160 |
T |
|
| Q |
308 |
aacacacactaagaagtctggagtgtatccattattttacatagtgaaagttttggctagactaggtttcatgcttttattttcttatatt |
398 |
Q |
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| T |
31940161 |
aacacacgctaagaagtctcaagtgtatccattattttacatagtgaaagttttggctagactaggtttcatgcttttattttcttatatt |
31940251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 256 - 314
Target Start/End: Complemental strand, 12557742 - 12557684
Alignment:
| Q |
256 |
aattgtaaagttagataaaagcatggtgggaggcaaattcaacgtggtaacaaacacac |
314 |
Q |
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| T |
12557742 |
aattgtagagttagaaaaaatcacggtgggaggcaaaatcaacgtggtaacaaacacac |
12557684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 12981043 - 12981093
Alignment:
| Q |
264 |
agttagataaaagcatggtgggaggcaaattcaacgtggtaacaaacacac |
314 |
Q |
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| T |
12981043 |
agttagataaacgcacggtgggaggcaaattcaacacggtaacaaatacac |
12981093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 264 - 317
Target Start/End: Complemental strand, 37648800 - 37648747
Alignment:
| Q |
264 |
agttagataaaagcatggtgggaggcaaattcaacgtggtaacaaacacacact |
317 |
Q |
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| T |
37648800 |
agttagataaaagcacggtgggaggcaaattaaacgtggtaacaaacacacact |
37648747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 37648866 - 37648817
Alignment:
| Q |
212 |
gtttgagtcacttttcttgcgtcccaatgctctgctatcatgataattgt |
261 |
Q |
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||||||| ||||||||||||||||||||| ||| |||| |||||||||| |
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| T |
37648866 |
gtttgagacacttttcttgcgtcccaatgtcctgttatcgtgataattgt |
37648817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 24769544 - 24769594
Alignment:
| Q |
264 |
agttagataaaagcatggtgggaggcaaattcaacgtggtaacaaacacac |
314 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
24769544 |
agttagataaaagcacggtgagaggcaaattcaacgtggtaacaaacacac |
24769594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 256 - 314
Target Start/End: Original strand, 30201610 - 30201668
Alignment:
| Q |
256 |
aattgtaaagttagataaaagcatggtgggaggcaaattcaacgtggtaacaaacacac |
314 |
Q |
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||||||| ||||||| ||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
30201610 |
aattgtagagttagaaaaaagcacggtgggaggcaaaaccaacgtggtaacaaacacac |
30201668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 256 - 314
Target Start/End: Complemental strand, 36992563 - 36992505
Alignment:
| Q |
256 |
aattgtaaagttagataaaagcatggtgggaggcaaattcaacgtggtaacaaacacac |
314 |
Q |
| |
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||||||| ||||||| ||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
36992563 |
aattgtagagttagaaaaaagcacggtgggaggcaaaaccaacgtggtaacaaacacac |
36992505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 323
Target Start/End: Original strand, 336730 - 336797
Alignment:
| Q |
256 |
aattgtaaagttagataaaagcatggtgggaggcaaattcaacgtggtaacaaacacacactaagaag |
323 |
Q |
| |
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||||||| ||||||| |||| |||||| ||||||||| ||||| ||||||||||||||| ||| |||| |
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| T |
336730 |
aattgtagagttagaaaaaaccatggtcggaggcaaaatcaacatggtaacaaacacacgctatgaag |
336797 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 314
Target Start/End: Complemental strand, 36684185 - 36684127
Alignment:
| Q |
256 |
aattgtaaagttagataaaagcatggtgggaggcaaattcaacgtggtaacaaacacac |
314 |
Q |
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||||||| ||||||| |||| || ||| ||||||||| ||||||||||||||||||||| |
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| T |
36684185 |
aattgtagagttagaaaaaaccacggttggaggcaaaatcaacgtggtaacaaacacac |
36684127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 213 - 314
Target Start/End: Complemental strand, 14691881 - 14691780
Alignment:
| Q |
213 |
tttgagtcacttttcttgcgtcccaatgctctgctatcatgataattgtaaagttagataaaagcatggtgggaggcaaattcaacgtggtaacaaacac |
312 |
Q |
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|||||| || |||||| ||||||||||| || || | |||||||||| ||||||||||| ||| |||||| || |||||||| |||| ||||||||| |
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| T |
14691881 |
tttgagccatttttctcacgtcccaatgcgctcttaccgtgataattgtggagttagataaacgcacggtgggtggaaaattcaatgtggaaacaaacac |
14691782 |
T |
|
| Q |
313 |
ac |
314 |
Q |
| |
|
|| |
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|
| T |
14691781 |
ac |
14691780 |
T |
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