View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2178_low_4 (Length: 361)
Name: NF2178_low_4
Description: NF2178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2178_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 355
Target Start/End: Original strand, 38126927 - 38127263
Alignment:
| Q |
19 |
cctatagtgatctaattactatttttcctcctcaactccaatcacacaagaaaagttaaaaactttaatcacacattcagacatgttttctttatttacc |
118 |
Q |
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| T |
38126927 |
cctatagtgatctaattactatttttcctcctcaactccaatcacacaagaaaagttaaaaactttaatcacacattcagacatgttttctttatttacc |
38127026 |
T |
|
| Q |
119 |
atttcaaccctgcaggccctatttatttgcaattcacatgattgttttacttttctacccaatccagccttcctttctgggagaaagaaggacatagcaa |
218 |
Q |
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| T |
38127027 |
atttcaaccctgcaggccctatttatttgcaattcacatgattgttttacttttctacccaatccagctttcctttctgggagaaagaaggacatagcag |
38127126 |
T |
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| Q |
219 |
agacagacaatttcctatcctaggtcaagtccaagggctcaaaattagctactgtaaaactgaaagcaggtacagtgtacagttctggaaaactaacaaa |
318 |
Q |
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| T |
38127127 |
agacaaacaatttcctatcctaggtcaagtccaagggctcaaaattagctactgtaaaactgaaagcaggtacagtgtacagttctggaaaactaacaaa |
38127226 |
T |
|
| Q |
319 |
attaggaaagaaaagcaatgacaacagcaacgtctct |
355 |
Q |
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| T |
38127227 |
attaggaaacaaaagcaatgataacagcaacgtctct |
38127263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 129 - 344
Target Start/End: Original strand, 28362653 - 28362863
Alignment:
| Q |
129 |
tgcaggccctatttatttgcaattcacatgattgttttacttttctacccaatccagccttcctttctgggagaaagaaggacatagcaaagacagacaa |
228 |
Q |
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| T |
28362653 |
tgcatgccatatttatttgcaattcacaagatagtttgactttt-tatccaatccaactttcctttctgagagaaagaaagagataacaaagagaagcaa |
28362751 |
T |
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| Q |
229 |
tttcctatcctaggtcaagtccaagggctcaaaattagctactgtaaaactgaaagcaggtacagtgtacagttctggaaaactaacaaaattaggaaag |
328 |
Q |
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||| |||||| ||||||||||||| ||||||| | ||||||||||||| ||| | || | || ||| || ||||| ||||||||||||| |||| |
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| T |
28362752 |
ttttctatcccaggtcaagtccaa----ccaaaatttgatactgtaaaactgcaagatgctataatgcacaattttggaacactaacaaaattaagaaac |
28362847 |
T |
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| Q |
329 |
aaaagcaatgacaaca |
344 |
Q |
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||||||||||| |||| |
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| T |
28362848 |
aaaagcaatgataaca |
28362863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 17787255 - 17787207
Alignment:
| Q |
39 |
atttttcctcctcaactccaatcacacaagaaaagttaaaaactttaat |
87 |
Q |
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|||||||||| | ||||| ||||||| ||| |||||||||||||||||| |
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| T |
17787255 |
atttttcctcttaaactctaatcacaaaagcaaagttaaaaactttaat |
17787207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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