View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2178_low_5 (Length: 352)
Name: NF2178_low_5
Description: NF2178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2178_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 5e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 158 - 315
Target Start/End: Complemental strand, 27569845 - 27569688
Alignment:
| Q |
158 |
cttatttacctttttcttttgttcccctctttatcttataatttcacatcctttcatataatattaaccacttttctccctatactaccctacaccctct |
257 |
Q |
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| T |
27569845 |
cttatttacctttttcttttgttcccctctttatcttataatttcacatcctttcatataatattaaccacttttctccctatactaccctacaccctct |
27569746 |
T |
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| Q |
258 |
atctctctatagagtatactatagtcctttttcttctctcaagtgtcattttctcaca |
315 |
Q |
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| T |
27569745 |
atctctctatagagtatactatagtcctttttcttctctcaagtgtcattttctcaca |
27569688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 27569983 - 27569933
Alignment:
| Q |
20 |
aagaattcgttgcagaaggacacacacaatgcacacgttaaagcttacaaa |
70 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27569983 |
aagaattcgttgcagaaggacacacacaatgcacacgttaaagcttacaaa |
27569933 |
T |
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