View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2178_low_9 (Length: 302)
Name: NF2178_low_9
Description: NF2178
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2178_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 3837728 - 3837430
Alignment:
| Q |
1 |
aatttaccgcagaagctttgtattgtatagtaaggtatgttctctaattagtttggttaagaaactgct--gtttatcggttgagttaaacggaattccc |
98 |
Q |
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| T |
3837728 |
aatttaccgcagaagctttgaattgtattgtaaggtatgttctctaattagtttggttaagaaactgctatgtttatcggttgagttaaacggaattccc |
3837629 |
T |
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| Q |
99 |
cttaagttgacctgttaatttattcttaaaccagttacttaaccatttgatttattaacaccttttttaaggatctccaagattttgcatcagatcaaca |
198 |
Q |
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| T |
3837628 |
cttaagttgacctgttaatttattcttaaaccagttacttaaccatttgatttattaacaccttttttaaggatctccaagattttgcaccagatcaaca |
3837529 |
T |
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| Q |
199 |
atcaacaaggataaccgagtcttctccttcttccgttacaaaggtaataagacataaaagtttttgttgtttccctttactttgatatcctttgctact |
297 |
Q |
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| T |
3837528 |
atcaacaaggataaccgagtcttctccttcttccgttacaaaggtaataagacataaaaatttatgttctttctcttttctttgctatcctttcctact |
3837430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 69 - 291
Target Start/End: Complemental strand, 3831398 - 3831170
Alignment:
| Q |
69 |
tgtttatcggttgagttaaacggaattccccttaagttgacctgttaatttattcttaaaccagttacttaaccatttgatttattaacaccttttttaa |
168 |
Q |
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||||||| ||||||||||||||| || |||||||| |||| || |||||||||||||||| |||| ||||||||||| ||||| ||||||| |||| || |
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| T |
3831398 |
tgtttatgggttgagttaaacggcgtttcccttaagatgacatgctaatttattcttaaactagttgcttaaccatttcatttactaacaccattttcaa |
3831299 |
T |
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| Q |
169 |
gg--atctccaagatttt-gcatcagatcaacaatca---acaaggataaccgagtcttctccttcttccgttacaaaggtaataagacataaaagtttt |
262 |
Q |
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| T |
3831298 |
gggtatcaagaaaattttggcagaagatgaacaattaatgacatccgtatccgagttttatccttcttttggtaccaaggtaatcagacataaaagttta |
3831199 |
T |
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| Q |
263 |
tgttgtttccctttactttgatatccttt |
291 |
Q |
| |
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|||||||||||||||||||| |||||||| |
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| T |
3831198 |
tgttgtttccctttactttgctatccttt |
3831170 |
T |
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