View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2179-Insertion-1 (Length: 1033)
Name: NF2179-Insertion-1
Description: NF2179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2179-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-178; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 631 - 989
Target Start/End: Complemental strand, 11197588 - 11197228
Alignment:
| Q |
631 |
gactcaatatattgagtcttaaacacataagtttatagatttaactgcaataattttaaactcgaatccatacaagataaagagaaagtaaggttttgtt |
730 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
11197588 |
gactcaatatattgagtcttaaacacttaagtttatagatttaactgcaataatttttaactcgaatccatacaagataaaaagaaagtaaggttttgtt |
11197489 |
T |
|
| Q |
731 |
tgcaatttacaaaagaactctaatccttaactctaatcttattcgtaactagagtttgaattttaaattcctcattgcaatttcgattagaaattttgac |
830 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
11197488 |
tgcaatttacaaaagaactctaatccttaactctaatcttattcgtaactagagtttcaattttaaattcctcattgcaatttcgattagaaattttgac |
11197389 |
T |
|
| Q |
831 |
tcgttgtttgtgattatgttcgcactttctcaaccaataccactattttattactcacaatttcatcatgaattcatatgtttgcattttctttatttca |
930 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11197388 |
tcgttgtttgtgattatgtttacactttctcaaccaataccactattttattactcacaatttcatcatgaattcatatgtttgcattttctttatttca |
11197289 |
T |
|
| Q |
931 |
aattttcgttctatgga-gtggcaaagccgttttctttcatatggaagtc-gttggtcctt |
989 |
Q |
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| T |
11197288 |
aattttcgttctatggaggtggcaaagccgttttctttcatatggaggtcggttggtcctt |
11197228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 247 - 539
Target Start/End: Complemental strand, 11197984 - 11197692
Alignment:
| Q |
247 |
aagtagatgagtgatcttggcatcgagtgatttccattaagtgtgtcttaactgtctttttgagccnnnnnnncaaacgtgagacttttgattaaaatat |
346 |
Q |
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| T |
11197984 |
aagtagatgagtgatcttggcatcgagtgatttccattaagtgtgtcttaaccgtctttttgagccaaaaaaacaaaggtgagacttttgattaaaatat |
11197885 |
T |
|
| Q |
347 |
actccttaatttcacattttagtcttctctaaaactataatgtctctttcattttcgtaagatgtctctttcatcttcatagtttgtaactatttggata |
446 |
Q |
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| T |
11197884 |
actccttaatttcacattttagtcttctctaaaactataatgtctctttcattttcgtaagatgtctctttcatcttcatagtttgtaactatttggata |
11197785 |
T |
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| Q |
447 |
tttttatttaattgtaaatcttaaaccaaatggacattaatcattaattagtaatacggagttaggaggggatcaacatagaccaaaatcgtt |
539 |
Q |
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| T |
11197784 |
tttttatttaattgtaaatcttaaaccaaatggaccttaatcattaattagtaatacggagttagaaggggatcaacatagaccaaaatcgtt |
11197692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 135; E-Value: 8e-70
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 11198223 - 11198041
Alignment:
| Q |
8 |
ggtaaaagtattgatctaatagtgcatttgagaacaaaggtaaccctccaagaacaaccactgcatagatcatttttctctctaaaattaattttaaatt |
107 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11198223 |
ggtaaaagtattgatctaattgtgcatttgagaacaaaggtaaccctccaagaacaaccactacatagatcatttttctctctaaaattaattttaaatt |
11198124 |
T |
|
| Q |
108 |
gtgtgnnnnnnnnnnnngcgagaattaacatgtagtgaaccttaacttaaagagttatgtggccatggcctttggtattgtaa |
190 |
Q |
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| T |
11198123 |
gtgtgttttttgtttttgcgagaattaacatgtagtgaaccttaacttatagagttatgtggccatggcctttggtattgtaa |
11198041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 364 - 445
Target Start/End: Original strand, 11182027 - 11182110
Alignment:
| Q |
364 |
tttagtcttctctaaaactataatgtctctttcattttcgtaa--gatgtctctttcatcttcatagtttgtaactatttggat |
445 |
Q |
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| T |
11182027 |
tttagtcttctctaaaactataatgtgtctttcattctttttagggatgtctctttcatctatatagtttgtaactatttggat |
11182110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 715 - 761
Target Start/End: Original strand, 36409762 - 36409808
Alignment:
| Q |
715 |
aaagtaaggttttgtttgcaatttacaaaagaactctaatccttaac |
761 |
Q |
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| T |
36409762 |
aaagtaaagttttgtttgcaatttacaaaagaacattaatccttaac |
36409808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 715 - 761
Target Start/End: Original strand, 2758308 - 2758354
Alignment:
| Q |
715 |
aaagtaaggttttgtttgcaatttacaaaagaactctaatccttaac |
761 |
Q |
| |
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||||||| |||||||||||||||||||||||||| |||| |||||| |
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| T |
2758308 |
aaagtaaagttttgtttgcaatttacaaaagaacattaattcttaac |
2758354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 715 - 748
Target Start/End: Complemental strand, 29608726 - 29608693
Alignment:
| Q |
715 |
aaagtaaggttttgtttgcaatttacaaaagaac |
748 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
29608726 |
aaagtaaagttttgtttgcaatttacaaaagaac |
29608693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 722 - 755
Target Start/End: Original strand, 33564309 - 33564342
Alignment:
| Q |
722 |
ggttttgtttgcaatttacaaaagaactctaatc |
755 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
33564309 |
ggttttgtttgcaatttacaaaaaaactctaatc |
33564342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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