View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2179-Insertion-10 (Length: 299)
Name: NF2179-Insertion-10
Description: NF2179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2179-Insertion-10 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 102 - 299
Target Start/End: Original strand, 31515009 - 31515206
Alignment:
| Q |
102 |
gtttagtgttaacccaccggttctcaggagaaagagaccaagaaatgtggctgcgaggtaattaaagttcgaccaagaattcttccacccttgaaatcaa |
201 |
Q |
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| T |
31515009 |
gtttagtgttaatccacctgttctcaggagaaagagaccaagaaatgtggctgcgaagtaattaaagttcgaccaagaattcttccacccttgaaatcaa |
31515108 |
T |
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| Q |
202 |
agtcatgatctccaaacaatttatctattggggagttcattaaccatttaagctcaattgcttgatacaaataaaaaccattctagtaacctatcgaa |
299 |
Q |
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| T |
31515109 |
agtcatgatctccaaacaatttatctattgtgtagttcattaaccatttaagctcaattgctcgatacaaataaaaaccattctaaaaacttatcgaa |
31515206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 12305444 - 12305377
Alignment:
| Q |
26 |
ctagtcattacaatatttaatattgatgtgaatttattcaaaacttgtttgaatcaataaacaaatag |
93 |
Q |
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| T |
12305444 |
ctagtcattacgatatttgatgttgttgtgaattgattcacaacttgtttgaatcaattaacaaatag |
12305377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 28 - 90
Target Start/End: Original strand, 9529186 - 9529248
Alignment:
| Q |
28 |
agtcattacaatatttaatattgatgtgaatttattcaaaacttgtttgaatcaataaacaaa |
90 |
Q |
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| T |
9529186 |
agtcattacaatatttattgttgttgtgaattgattcataacttgctttaatcaattaacaaa |
9529248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 53530339 - 53530388
Alignment:
| Q |
33 |
ttacaatatttaatattgatgtgaatttattcaaaacttgtttgaatcaa |
82 |
Q |
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| T |
53530339 |
ttacaatatttaattttgttgtgaatttattcacaacttacttgaatcaa |
53530388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 2521101 - 2521037
Alignment:
| Q |
26 |
ctagtcattacaatatttaatattgatgtgaatttattcaaaacttgtttgaatcaataaacaaa |
90 |
Q |
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| T |
2521101 |
ctagtcattacaacatttaatattgttgggaattgattcatgacttgcttgaattaatcaacaaa |
2521037 |
T |
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