View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2179-Insertion-12 (Length: 193)
Name: NF2179-Insertion-12
Description: NF2179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2179-Insertion-12 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 3e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 8 - 193
Target Start/End: Original strand, 22686691 - 22686876
Alignment:
| Q |
8 |
tcaattttcaactcaccaaattcacaaaacacaaaaccaaaacacagaaacagttcatccgaatgtcgtcgcactttcgcatcatcgacgacatcctcag |
107 |
Q |
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| T |
22686691 |
tcaattttcaactcaccaaattcacaaaacacaaaaccaaaacacagaaacagttcatcagaatgtcgtcgcactttcgcatcatcgacgacatcctcag |
22686790 |
T |
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| Q |
108 |
tctttccaaacactcatttcacaaaccatgaatctcttccatcatttcaagaatccttcaatgaattcaataaagtgtatcctcaa |
193 |
Q |
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| T |
22686791 |
tctttccaaacactcatttcacaaaccatgaatctcttccatcatttcaagaatcattcaatgaattcaataaagtgtatcctcaa |
22686876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 8 - 193
Target Start/End: Complemental strand, 22752377 - 22752192
Alignment:
| Q |
8 |
tcaattttcaactcaccaaattcacaaaacacaaaaccaaaacacagaaacagttcatccgaatgtcgtcgcactttcgcatcatcgacgacatcctcag |
107 |
Q |
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| T |
22752377 |
tcaattttcaactcaccaaattcacaaaacacaaaaccaaaacacagaaacagttcatcagaatgtcgtcgcactttcgcatcatcgacgacatcctcag |
22752278 |
T |
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| Q |
108 |
tctttccaaacactcatttcacaaaccatgaatctcttccatcatttcaagaatccttcaatgaattcaataaagtgtatcctcaa |
193 |
Q |
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| T |
22752277 |
tctttccaaacactcatttcacaaaccatgaatctcttccatcatttcaagaatcattcaatgaattcaataaagtgtatcctcaa |
22752192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 99 - 189
Target Start/End: Original strand, 45957260 - 45957350
Alignment:
| Q |
99 |
catcctcagtctttccaaacactcatttcacaaaccatgaatctcttccatcatttcaagaatccttcaatgaattcaataaagtgtatcc |
189 |
Q |
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| T |
45957260 |
catcctcaatttttccaaacaccaaattcacaaaccatgaatctcttccatcacttcatgaatcattcactgaattcatcaaagtgtatcc |
45957350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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