View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2179-Insertion-2 (Length: 1019)
Name: NF2179-Insertion-2
Description: NF2179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2179-Insertion-2 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 962; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 962; E-Value: 0
Query Start/End: Original strand, 8 - 1011
Target Start/End: Original strand, 41597550 - 41598555
Alignment:
| Q |
8 |
ttacttagtgttgaaaatgtgccgttgtgtgctgaacaaaaggatggatccatggtggagagtggaacacaggttggtgaacttgatggagggaaggtgc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |
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|
| T |
41597550 |
ttacttagtgttgaaaatgtgccgttgtgtgctgaacaaaaggatggatccatggtggagagtagaacacaggttggtgaacttgatggagggaagatgc |
41597649 |
T |
|
| Q |
108 |
gttcgaagaaacaagggaggaagagggatgctgtggatttgaggacccttttggttctgagtgcacaagctgtatctgctaatgacaataggactgctaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41597650 |
gttcgaagaaacaagggaggaagagggatgctgtggatttgaggacccttttggttctgtgtgcacaagctgtatctgctaatgacaataggactgctaa |
41597749 |
T |
|
| Q |
208 |
tgaattgttgaagcagattaggaaccattcttctctttcaggtgatgcatcacagagaatggctcattactttgcgaatgcgattgaagcgcgcatggtt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41597750 |
tgaattgttgaagcagattaggaaccattcttctccttcaggtgatgcatcacagagaatggctcattactttgcgaatgcgattgaagcgcgcatggtt |
41597849 |
T |
|
| Q |
308 |
ggtgctggtaccggtacacaaatattatatatgagccaaaagatgtttagtgctgctgatttcttgaaagcttaccaagtttttatctctgcttgccctt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41597850 |
ggtgctggtaccggtacacaaatattatatatgagccaaaagatgtttagtgctgctgatttcttgaaagcttaccaagtttttatctctgcttgccctt |
41597949 |
T |
|
| Q |
408 |
tcaaaaaatttgcgcatttctttgcaaataaaatgatattgaaaacagctgaaaaggcaggaacccttcacattattgattttggtatcttatatggttt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41597950 |
tcaaaaaatttgcgcatttctttgcaaataaaatgatattgaaaacagctgaaaaggcagaaacccttcacattattgattttggtatcttatatggttt |
41598049 |
T |
|
| Q |
508 |
ccagtggccaattcttattaagtttttgtcaaaagtagagggtggaccacccaagttgaggatcacaggaattgagtatccccaagctggctttcgaccg |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
41598050 |
ccagtggccaattcttattaagtttttgtcaaaagtagagggtggaccacccaagttgaggatcacaggaatcgagtatccccaagctggctttcgaccg |
41598149 |
T |
|
| Q |
608 |
gcagagagaatcgaggaaactggccggcgtttagctaactattgtgaacgtttcaatgtttccttcgaatacaaggccataccatcacgaaattgggaaa |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41598150 |
gcagagagaatcgaggaaactggccggcgtttagctaactattgtgaacgtttcaatgtttccttcgaatacaaggccataccatcacgaaattgggaaa |
41598249 |
T |
|
| Q |
708 |
ccattcaaattgaagaccttaatattaagagcaatgaggtagtggctgtgaactgtttggtaaggtttaagaatttacatgatgagacaatcgacgtgaa |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41598250 |
ccattcaaattgaagaccttaatattaagagcaatgaggtagtggctgtgaactgtttggtaaggtttaagaatttacatgatgagacaatcgacgtgaa |
41598349 |
T |
|
| Q |
808 |
cagtcctaaagatgcagttctgaagttaatcaggaagataaatccgcacatatttgttcaatccatagtaaatgggtcttataatgcccctttcttttcc |
907 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41598350 |
cagtcctaaagatgcagttctgaagttaatcaggaagataaatccgcacatatttgttcaatccatagtaaatgggtcttataatgcccctttcttttcc |
41598449 |
T |
|
| Q |
908 |
acacgcttcaaggagtcacttttccattattctgcaatgtttgatatgtatgatactctcatatcccgtg-aaacgaatgga-gtcgatgattgagagag |
1005 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||| |
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|
| T |
41598450 |
acacgcttcaaggagtcacttttccattattctgcaatgtttgatatgtatgatactctcatatcccgtgaaaatgaatggaggtcgatgattgagagag |
41598549 |
T |
|
| Q |
1006 |
agtttt |
1011 |
Q |
| |
|
|||||| |
|
|
| T |
41598550 |
agtttt |
41598555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 39576034 - 39576225
Alignment:
| Q |
20 |
gaaaatgtgccgttgtgtgctgaacaaaaggatggatccatggtggagagtggaacacaggttggtgaacttgatggagggaaggtgcgttcgaagaaac |
119 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
39576034 |
gaaaatgtatcgttgtgtgctgaacaaaaggatggatcagtggtggagagtagaacacaggttggtgaacttgatggagggaaggcgcgttcgaagaaac |
39576133 |
T |
|
| Q |
120 |
aagggaggaagagggatgctgtggatttgaggacccttttggttctgagtgcacaagctgtatctgctaatgacaataggactgctaatgaa |
211 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
39576134 |
aagggaggaagagggatgttgtggatttgaggacccttttggttatgtgtgcacaagctgtgtctgctaatgacaataggattgctaatgaa |
39576225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 2e-39; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 407 - 794
Target Start/End: Original strand, 23904737 - 23905124
Alignment:
| Q |
407 |
ttcaaaaaatttgcgcatttctttgcaaataaaatgatattgaaaacagctgaaaaggcaggaacccttcacattattgattttggtatcttatatggtt |
506 |
Q |
| |
|
||||| |||||||| |||| |||| |||| ||||||| ||||| |||| ||| || | ||||||||| || |||||||||||| || | ||||||| |
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|
| T |
23904737 |
ttcaagaaatttgcatatttgtttggaaatgaaatgattatgaaagttgctgcaaaagctgaaacccttcatatcattgattttggtgtcctttatggtt |
23904836 |
T |
|
| Q |
507 |
tccagtggccaattcttattaagtttttgtcaaaagtagagggtggaccacccaagttgaggatcacaggaattgagtatccccaagctggctttcgacc |
606 |
Q |
| |
|
| ||||||||||| |||||||||||| | ||||| ||| |||||||| || || |||||||||| || || |||| ||| | | |||||||| || |
|
|
| T |
23904837 |
ttcagtggccaatgcttattaagtttctatcaaatagagaaggtggaccgccaaaactgaggatcactgggatagagttccccttaccaggctttcgccc |
23904936 |
T |
|
| Q |
607 |
ggcagagagaatcgaggaaactggccggcgtttagctaactattgtgaacgtttcaatgtttccttcgaatacaaggccataccatcacgaaattgggaa |
706 |
Q |
| |
|
| |||| ||||||||||| || || || || | ||||||||||| | |||||||||||| | ||||| ||||| ||| || |||| || || |||||| |
|
|
| T |
23904937 |
gacagaaagaatcgaggagaccggtcgtcgacttgctaactattgcaagcgtttcaatgttcctttcgagtacaatgccctagcatcgcggaaatgggaa |
23905036 |
T |
|
| Q |
707 |
accattcaaattgaagaccttaatattaagagcaatgaggtagtggctgtgaactgtttggtaaggtttaagaatttacatgatgaga |
794 |
Q |
| |
|
|| |||| | ||||||| ||||| || |||||||| |||||||| |||||||||||| ||| |||||||||||||||| ||||||| |
|
|
| T |
23905037 |
acaattcgagttgaagatcttaaaatcaagagcaacgaggtagttgctgtgaactgtgtggggaggtttaagaatttactagatgaga |
23905124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 407 - 794
Target Start/End: Complemental strand, 23922247 - 23921860
Alignment:
| Q |
407 |
ttcaaaaaatttgcgcatttctttgcaaataaaatgatattgaaaacagctgaaaaggcaggaacccttcacattattgattttggtatcttatatggtt |
506 |
Q |
| |
|
||||| |||||||| |||| |||| |||| ||||||| ||||| |||| ||| || | ||||||||| || ||||||||||||||| | ||||||| |
|
|
| T |
23922247 |
ttcaagaaatttgcatatttgtttggaaatgaaatgattatgaaagttgctgcaaaagctgaaacccttcatatcattgattttggtatcctttatggtt |
23922148 |
T |
|
| Q |
507 |
tccagtggccaattcttattaagtttttgtcaaaagtagagggtggaccacccaagttgaggatcacaggaattgagtatccccaagctggctttcgacc |
606 |
Q |
| |
|
| ||||||||||| |||||||||||| | ||||| ||| |||||||| || || |||||||||| || || || | ||| | | |||||||| || |
|
|
| T |
23922147 |
ttcagtggccaatgcttattaagtttctatcaaatagagaaggtggaccgccaaaactgaggatcactgggatagaattccccttaccaggctttcgccc |
23922048 |
T |
|
| Q |
607 |
ggcagagagaatcgaggaaactggccggcgtttagctaactattgtgaacgtttcaatgtttccttcgaatacaaggccataccatcacgaaattgggaa |
706 |
Q |
| |
|
| ||| ||||||||||| || || || || | ||||||||||| | |||||||||||| ||||| ||||| ||| || |||| || || |||||| |
|
|
| T |
23922047 |
gaaagaaagaatcgaggagaccggtcgtcgacttgctaactattgcaagcgtttcaatgttctgttcgagtacaatgccctagcatcgcggaaatgggaa |
23921948 |
T |
|
| Q |
707 |
accattcaaattgaagaccttaatattaagagcaatgaggtagtggctgtgaactgtttggtaaggtttaagaatttacatgatgaga |
794 |
Q |
| |
|
|| |||| | ||||||| ||||| || |||||||| |||||||| |||||||||||| ||| |||||||||||||||| ||||||| |
|
|
| T |
23921947 |
acaattcgagttgaagatcttaaaatcaagagcaacgaggtagttgctgtgaactgtgtggggaggtttaagaatttactagatgaga |
23921860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 404 - 852
Target Start/End: Complemental strand, 23912235 - 23911787
Alignment:
| Q |
404 |
cctttcaaaaaatttgcgcatttctttgcaaataaaatgatattgaaaacagctgaaaaggcaggaacccttcacattattgattttggtatcttatatg |
503 |
Q |
| |
|
||||||||||| ||||| | |||||||||||||||||||| ||||| | ||| ||| || | ||||||||| || ||||||||||||||| |||||| |
|
|
| T |
23912235 |
cctttcaaaaagtttgcatacttctttgcaaataaaatgattatgaaagcttctgcaaatgctgaaacccttcatatcattgattttggtatcctatatg |
23912136 |
T |
|
| Q |
504 |
gtttccagtggccaattcttattaagtttttgtcaaaagtagagggtggaccacccaagttgaggatcacaggaattgagtatccccaagctggctttcg |
603 |
Q |
| |
|
|||| ||||||||||| ||||| |||||||| ||| | ||| |||||||| || || ||| |||||| || || |||| || | |||| ||||| |
|
|
| T |
23912135 |
gttttcagtggccaatacttataaagtttttatcagatagagaaggtggacctccaaacctgaagatcaccgggatagagttccctttacctggttttcg |
23912036 |
T |
|
| Q |
604 |
accggcagagagaatcgaggaaactggccggcgtttagctaactattgtgaacgtttcaatgtttccttcgaatacaaggccataccatcacgaaattgg |
703 |
Q |
| |
|
|| || | |||||| |||||||| || ||| | || |||| || | || ||| ||||| |||| || | || ||||||||||| || ||||| |
|
|
| T |
23912035 |
tccaatggaaaaaatcgaagaaactggtcgtcgtcttgccgactactgcaagcgcttccatgttccctttgagtttaatgccataccatcgcgttattgg |
23911936 |
T |
|
| Q |
704 |
gaaaccattcaaattgaagaccttaatattaagagcaatgaggtagtggctgtgaactgtttggtaaggtttaagaatttacatgatgagacaatcgacg |
803 |
Q |
| |
|
||||| |||||| | || || ||||| || |||||||||||||| || | |||||||| |||| | || |||||||||||| ||||| | || || | |
|
|
| T |
23911935 |
gaaacaattcaagtggaggatcttaaaatcaagagcaatgaggttgttgttgtgaactctttgatgagatttaagaatttattggatgaaagtattgaag |
23911836 |
T |
|
| Q |
804 |
tgaacagtcctaaagatgcagttctgaagttaatcaggaagataaatcc |
852 |
Q |
| |
|
|||||||||||| | | || |||||| | |||||||| ||||||||||| |
|
|
| T |
23911835 |
tgaacagtcctagaaacgcggttctgcatttaatcagaaagataaatcc |
23911787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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