View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2179-Insertion-4 (Length: 740)
Name: NF2179-Insertion-4
Description: NF2179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2179-Insertion-4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 566; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 5 - 740
Target Start/End: Original strand, 38710083 - 38710803
Alignment:
| Q |
5 |
acattgatgtgtgctggtggttcacgataaggagagaatgaaagagggacacatatatgtatacatgtacaggctcaccataaaactggttcacgataaa |
104 |
Q |
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| T |
38710083 |
acattgatgtgtgctggtggttcacgataaggagagaatgaaagagggacacatatatgtataca------ggctcgccataaaactggttcacgataaa |
38710176 |
T |
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| Q |
105 |
actagtagttacgtccagttaagaaatctcatgctatggcgacaacgaggaaagtaacgacaatctcattgagtaattatttgatagattgtcaaatgtt |
204 |
Q |
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| T |
38710177 |
actagtagttacgtccagttaagaaatctcatgctatggcgacaacgaggaaagtaacgacgatctcattgagtaattatttgatagattgtcaaacgtt |
38710276 |
T |
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| Q |
205 |
tgccatatggaatgtggtgacccttttttatgaattcccacaacttgaaaaaatgggaaaggccgagaggaaacatttgaaaccttggatcaaaataaca |
304 |
Q |
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| T |
38710277 |
tgccatatggaatgtggtgacccttttttatgaattcccacaacttgaaaaaatgggaaaggccgagaggaaacatttgaaaccttggatcaaaataaca |
38710376 |
T |
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| Q |
305 |
tgnnnnnnnnngatgaaataccaaattgttatctgaaattaagttaatggaccaaaagcactttattattttctttatcacgcaagcagctgaccttgga |
404 |
Q |
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| T |
38710377 |
tgaaaaaaaaagatgaaataccaaattgttatctgaaattaagttaatggaccaaaatcactttattattttc-ttatcacgcaagcagctgactttgga |
38710475 |
T |
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| Q |
405 |
atttggtgatgcaaatagtggtttggatctagaggccgaagaagatgtcgatcgatgggatgtccagttatcatcaactccaggagaaaataacataaag |
504 |
Q |
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| T |
38710476 |
atttggtgatgcaaatagtggtttggatctagaggccgaagaagatgtcgatcgatgggatgtccagttatcatcaactccaggagaaaataacat-aag |
38710574 |
T |
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| Q |
505 |
agnnnnnnnnatcactcttgactgtttttgtccataatctgccatttacaaccacgtacgtatgcannnnnnnnncttttcgaagaaagaatgattctta |
604 |
Q |
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| T |
38710575 |
ag--ttttttatcactctcgactgtttttgtccataatctgccatttacaaccacgtacgtatgcatttttttttcttttcgaagaaagaatgattctta |
38710672 |
T |
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| Q |
605 |
atttcaacaatttaattatctgctttactaatatctagatgtataaacttttgttatagtgagaaggaagtagaagaggtcttcagccgctttggtactg |
704 |
Q |
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| T |
38710673 |
atttcaac-----aattatctgctttactaatatctagatgtataaacttttgttatagtgagaaggaagtagaagaggtcttaagccgctttggtactg |
38710767 |
T |
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| Q |
705 |
tcgcaaaagttcatgtattttggggactcactgttg |
740 |
Q |
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| T |
38710768 |
tcgcaaaagttcatgtattttggggactcactgttg |
38710803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 324 - 362
Target Start/End: Complemental strand, 685003 - 684965
Alignment:
| Q |
324 |
accaaattgttatctgaaattaagttaatggaccaaaag |
362 |
Q |
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| T |
685003 |
accaaattgttatctgaaattaagttaagggactaaaag |
684965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 324 - 362
Target Start/End: Original strand, 11362044 - 11362082
Alignment:
| Q |
324 |
accaaattgttatctgaaattaagttaatggaccaaaag |
362 |
Q |
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| T |
11362044 |
accaaattgttatctgaaattaagttaagggacgaaaag |
11362082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 324 - 362
Target Start/End: Complemental strand, 25061351 - 25061313
Alignment:
| Q |
324 |
accaaattgttatctgaaattaagttaatggaccaaaag |
362 |
Q |
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| T |
25061351 |
accaaattgttacctgaaattaagttaagggaccaaaag |
25061313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 324 - 362
Target Start/End: Original strand, 32809383 - 32809421
Alignment:
| Q |
324 |
accaaattgttatctgaaattaagttaatggaccaaaag |
362 |
Q |
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| T |
32809383 |
accaaactgttacctgaaattaagttaatggaccaaaag |
32809421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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