View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2179-Insertion-5 (Length: 720)
Name: NF2179-Insertion-5
Description: NF2179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2179-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 469 - 714
Target Start/End: Complemental strand, 45583017 - 45582778
Alignment:
| Q |
469 |
aaatcaatataatttcatgtttcgtggatactatttgaatatcaaatacaagccgagccgagtccaaccatataaacagatcgtattcccttagtcccaa |
568 |
Q |
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| T |
45583017 |
aaatcaatataatttcatgtttcgtggatactatt-gaatatcaaatacaagccgag-----tccaaccatataaacagatcgtattcccttagtcccaa |
45582924 |
T |
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| Q |
569 |
gtacaacaaacttacaacagcagacgtgatattacttaacttaataaattcataaaaacatgatgccattgccaagtgaaatctatatgggtgcgtagtc |
668 |
Q |
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| T |
45582923 |
gtacaacaaacttacaacagcagacgtgatattacttaacttaataaattcataaaaacatgatgccattgccaagtgaaatctatatgggtgcgtagtc |
45582824 |
T |
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| Q |
669 |
atcagcagccggaggagcttgagatatggcagataatacaacaaag |
714 |
Q |
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| T |
45582823 |
atcagcagccggaggagcttgagatatggcagataatacaacaaag |
45582778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 204 - 430
Target Start/End: Complemental strand, 45584139 - 45583918
Alignment:
| Q |
204 |
gatgtcagagaggtatatgtcatagtgaagttagaaattgtgagaaacttaaacaccacatatactatttgacataagagtcatctcaattatatatttt |
303 |
Q |
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| T |
45584139 |
gatgtcagagaggtatatgtcatagtgaagttagaaattgtgagaaacttaaacaccacatatactattt-----aagagtcatctcaattatatatttt |
45584045 |
T |
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| Q |
304 |
ttaacacatacatttttattcaatgtcggacttctaattagatatgaatcctcgtccgctctagcttttgcctcatcaataataaaaaacttaaaatgaa |
403 |
Q |
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| T |
45584044 |
ttaacacatacatttttattcaatgttggacttctaattagataagaatcctcgtccgctctagcttttgcctcatcaataataaaaaacttaaaatgaa |
45583945 |
T |
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| Q |
404 |
gttagttttttcatccaacctcaaaat |
430 |
Q |
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| T |
45583944 |
gttagttttttcatccaacctcaaaat |
45583918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 7 - 179
Target Start/End: Complemental strand, 45584341 - 45584166
Alignment:
| Q |
7 |
agtttcttctttagacttcttaacaagtgcactgatgacacttgttatcannnnnnnaagaaaaatcgtagggttaaataagattaggtgtgtgg---aa |
103 |
Q |
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| T |
45584341 |
agtttcttctttagacttcttaacaagtgcactgatgacacttgttatcatttttttaagaaaaatcatagggttaaattagattaggtgtgtgtggaaa |
45584242 |
T |
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| Q |
104 |
agagaaaaaagatggataagaaaatggtgttgaaggttaaggagaagagtggtatttttcgtaaacaaaatgtttt |
179 |
Q |
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| T |
45584241 |
agagaaaaaagatggataagaaaatggtgttgaaggttaaggagaagagtgatatttttcgtaaacaaaatgtttt |
45584166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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