View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2179-Insertion-6 (Length: 692)

Name: NF2179-Insertion-6
Description: NF2179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2179-Insertion-6
NF2179-Insertion-6
[»] chr4 (1 HSPs)
chr4 (7-692)||(28228022-28228704)


Alignment Details
Target: chr4 (Bit Score: 592; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 592; E-Value: 0
Query Start/End: Original strand, 7 - 692
Target Start/End: Original strand, 28228022 - 28228704
Alignment:
Q  7 agttgtgatattaagcaccagaatttcaactcagggatgggtcacaaaaatagtggagacactgaaaagttacagatatcaagtacataatcaaaatcac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28228022 agttgtgatattaagcaccagaatttcaactcagggatgggtcacaaaaatagtggagacactgaaaagttacagatatcaagtacataatcaaaatcac 28228121  T
Q  107 ggatagaaaaggatgtgggggcaaatagaatatagcaatcaagcataactgctagatgctttccctaaatcaggttggcaaaattaggttatctatttta 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28228122 ggatagaaaaggatgtgggggcaaatagaatatagcaatcaagcataactgctagatgctttccctaaatcaggttggcaaaattaggttatctatttta 28228221  T
Q  207 tagacgccacatctaagatggactcttgtgatgtaggagtacgaatcctctcaccagttccaataggtttctttgtgtggctggatcttgcccaataatt 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28228222 tagacgccacatctaagatggactcttgtgatgtaggagtacgaatcctctcaccagttccaataggtttctttgtgtggctggatcttgcccaataatt 28228321  T
Q  307 acactttgaatgttcttttccttagcctaagataatgctcggcagaatatcctcagccagtgctattatcccactgtacaggatcaaaaatatggtcaat 406  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28228322 acactttgaatgctcttttccttagcctgagataatgctcggcagaatatcctcagccagtgctattatcccactgtacaggatcaaaaatatggtcaat 28228421  T
Q  407 ctttctggaaagcagttatgtatcacactgacattcctccgcaaacatgcttcacgaatcgagaaaaactccatcctacaagttcaacaaaatacaaaat 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | | |||    
T  28228422 ctttctggaaagcagttatgtatcacactgacattcctccgcaaacatgcttcatgaatcgagaaaaactccatcctacaagttcaacaaaa-agacaat 28228520  T
Q  507 caagttcaataataagtcaagaattgataacctgaaggtccatttggtttaagaaaatctttgnnnnnnnnnnnnnnnnnaattacaaaaatgtcaatat 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||    
T  28228521 caagttcaataataagtcaagaattgataacctgaaggtccatttggtttaagaaaatctttgtttttatttttacttttaattacaaaaatgtcaatat 28228620  T
Q  607 gctttagttctgttttgagttttcaaaatatttgtgcaggaaacaacaacaaaaatgctgtctaaacaccaagatctccacatgag 692  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||    
T  28228621 gctttagttctgttttgagttttcaaaatatttgtgcaggaaacaaca--gaaaatgctgtctaaacaccaagatctccacatgag 28228704  T

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