View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2179-Insertion-8 (Length: 483)
Name: NF2179-Insertion-8
Description: NF2179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2179-Insertion-8 |
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| [»] chr1 (2 HSPs) |
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| [»] chr8 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 7 - 483
Target Start/End: Original strand, 8460371 - 8460847
Alignment:
| Q |
7 |
actaattacactcttaatcaagcagagtataattatgattataaaatgttgatctgcatctacttttgattactgcaggggtatgcatacatattgactc |
106 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8460371 |
actaattacactcttaatcaaacagagtataattatgattataaaatgttgatctgcatctacttttgattactgcaggggtatgcatacatattgactc |
8460470 |
T |
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| Q |
107 |
atcctgggacaccaacaattttctatgaccacttttatgattggaataactcatttcatgagcagattgtgaagttggtacgtaaattgctggtgtcatt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
8460471 |
atcctgggacaccaacaattttctatgaccacttttatgattggaataactcatttcatgagcagattgtgaagttggtacgtaaaatactggtgtcatt |
8460570 |
T |
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| Q |
207 |
tgttcatnnnnnnncatactagtattatgccgcattttcttttgacaaaaagaacctagtataccaatctgcatttaactgcagattgacactcgcaagc |
306 |
Q |
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| T |
8460571 |
tgttcataaaaaaacatactagtattatgccgcattttcttttgacaaaaagaacctagtataccaatctgcatttaactgcagattgacactcgcaagc |
8460670 |
T |
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| Q |
307 |
gtcaaggtattcatagcagatcacctattaggattctggaggccaagcacaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggaga |
406 |
Q |
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| T |
8460671 |
gtcaagatattcatagcagatcacctattaggattctggaggccaagcacaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggaga |
8460770 |
T |
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| Q |
407 |
tggttcatggagcccatctgggagggaatggacactctcaacatgtggctataactatgctgtatggcacaattagt |
483 |
Q |
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| T |
8460771 |
tggttcatggagcccatctgggagggaatggacactctcaacatgtggctataactatgctgtatggcacaagtagt |
8460847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 394 - 483
Target Start/End: Original strand, 12950893 - 12950980
Alignment:
| Q |
394 |
tgaagattggagatggttcatggagcccatctgggagggaatggacactctcaacatgtggctataactatgctgtatggcacaattagt |
483 |
Q |
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| T |
12950893 |
tgaagattggagatggttcatggagcccatctgggagggaatggaca--ctcaaccagtggccataactaggttgtatggcacaagtagt |
12950980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 5e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 320 - 483
Target Start/End: Original strand, 12127294 - 12127455
Alignment:
| Q |
320 |
tagcagatcacctattaggattctggaggccaagcacaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggagatggttcatggagc |
419 |
Q |
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| T |
12127294 |
tagcagatcaactattaggattctggaggctaagcagaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggagatggttcatggagc |
12127393 |
T |
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| Q |
420 |
ccatctgggagggaatggacactctcaacatgtggctataactatgctgtatggcacaattagt |
483 |
Q |
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| T |
12127394 |
ccatctaggagggaatggaca--ctcaaccagtggccataactaggttgtatggcacaagtagt |
12127455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 483
Target Start/End: Complemental strand, 32220353 - 32220291
Alignment:
| Q |
419 |
cccatctgggagggaatggacactctcaacatgtggctataactatgctgtatggcacaattagt |
483 |
Q |
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| T |
32220353 |
cccatctgggagggaatggaca--ctcaaccagtggccataactaggttgtatggcacaagtagt |
32220291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 5e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 320 - 483
Target Start/End: Original strand, 23101499 - 23101660
Alignment:
| Q |
320 |
tagcagatcacctattaggattctggaggccaagcacaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggagatggttcatggagc |
419 |
Q |
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|||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23101499 |
tagcagatcaactattaggattctggaggccaagcagaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggagatggttcatggagc |
23101598 |
T |
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| Q |
420 |
ccatctgggagggaatggacactctcaacatgtggctataactatgctgtatggcacaattagt |
483 |
Q |
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| T |
23101599 |
ccatctaggagggaatggaca--ctcaacccgtggccataactagattgtatggcacaagtagt |
23101660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 339 - 483
Target Start/End: Complemental strand, 39618903 - 39618762
Alignment:
| Q |
339 |
attctggaggccaagcacaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggagatggttcatggagcccatctgggagggaatgga |
438 |
Q |
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| T |
39618903 |
attctggaggccaagcagaacgtttactctgcaatcattggggagaaagtgtgcatgaagattggagatggttcat-gagcccatctaggagggaatgga |
39618805 |
T |
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| Q |
439 |
cactctcaacatgtggctataactatgctgtatggcacaattagt |
483 |
Q |
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| T |
39618804 |
ca--ctcaaccagtggtcataactaggttgtatggcacaagtagt |
39618762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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