View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2179-Insertion-9 (Length: 483)
Name: NF2179-Insertion-9
Description: NF2179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2179-Insertion-9 |
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| [»] chr2 (9 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 2e-72; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 325 - 483
Target Start/End: Original strand, 36738385 - 36738543
Alignment:
| Q |
325 |
gtaatgttatcttttctaaaactcacacccaccgtacaactctatattatggttattttgtagaaaattgcttgacacaataaagtagactaaaatacac |
424 |
Q |
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| T |
36738385 |
gtaatgttatcttttctaaaactcacacccaccgtacaactctatattatggttattttgtagaaaattgcttgacacaataaagaatactaaaatacac |
36738484 |
T |
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| Q |
425 |
tagttaaatatcaaaatacccctcattagttcggcgcctctgcattagtagaagcttca |
483 |
Q |
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| T |
36738485 |
tagttaaatatcaaaatacccctcatcagttcggcacctctgcattggtagaagcttca |
36738543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 211 - 322
Target Start/End: Original strand, 36738181 - 36738292
Alignment:
| Q |
211 |
attaaattaccgacgtttatatggtttgaatacgaacctactgctccacttaaagatgccatgactcttccgctagaatggaaaatgtaaaaatgaaaat |
310 |
Q |
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| T |
36738181 |
attaaattacagacgtttatatggtttgaatacgaacctactgcaccacttgaagatgtcatgactctttcgctagaatggaaaatgtaaaaatgaaaat |
36738280 |
T |
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| Q |
311 |
gtagaagctgcg |
322 |
Q |
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| T |
36738281 |
gtagaagctgcg |
36738292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 6 - 112
Target Start/End: Original strand, 36739741 - 36739847
Alignment:
| Q |
6 |
cagatgctgagtggtaggacccaatagctttacatagaagaagttaagagcattgttgttgaattgttgacgggttttggagcctgggatgctgtggtgc |
105 |
Q |
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| T |
36739741 |
cagatgctgagtggttggacccaatagctctacatagaagaagttaagaggattgttgttgaattgttgacggattttggagtctgggatgctgtggtgc |
36739840 |
T |
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| Q |
106 |
aaaattt |
112 |
Q |
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| T |
36739841 |
aaaattt |
36739847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 36722208 - 36722277
Alignment:
| Q |
6 |
cagatgctgagtggtaggacccaatagctttacatagaagaagttaagagcattgttgttgaattgttga |
75 |
Q |
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| T |
36722208 |
cagatgctgagtggtaggacccaacagctctacatagaagaagttaagaggattgttgttgaattgttga |
36722277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 36722400 - 36722338
Alignment:
| Q |
13 |
tgagtggtaggacccaatagctttacatagaagaagttaagagcattgttgttgaattgttga |
75 |
Q |
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| T |
36722400 |
tgagtggtaggacccaacagctctacatagaagaagttaagaggattgttgttgaattgttga |
36722338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 36738113 - 36738180
Alignment:
| Q |
6 |
cagatgctgagtggtaggacccaatagctttacatagaagaagttaagagcattgttgttgaattgtt |
73 |
Q |
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| T |
36738113 |
cagatgctgagtggtaggacccaacaactctacataaaagaagttaagaggattgttgttgaattgtt |
36738180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 36725735 - 36725662
Alignment:
| Q |
13 |
tgagtggtaggacccaatagctttacatagaagaagttaagagcattgttgttgaattgttgacgggttttgga |
86 |
Q |
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| T |
36725735 |
tgagtggtaggacccaacagctctacatagaagaagttaagaagattgttgtttaattgttgatggattttgga |
36725662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 36739952 - 36739858
Alignment:
| Q |
13 |
tgagtggtaggacccaatagctttacatagaagaagttaagagcattgttgttgaattgttgacgggttttggagcctgggatgctgtggtgcaaaat |
110 |
Q |
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| T |
36739952 |
tgagtggtaggacccaacaactctacatataagaagttaagagga---ttgttgaatttttgatggattttggaggatgggatgctttggtgcaaaat |
36739858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 75
Target Start/End: Original strand, 36722296 - 36722328
Alignment:
| Q |
43 |
aagaagttaagagcattgttgttgaattgttga |
75 |
Q |
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| T |
36722296 |
aagaagttaagaggattgttgttgaattgttga |
36722328 |
T |
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