View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2179R-Insertion-2 (Length: 1015)
Name: NF2179R-Insertion-2
Description: NF2179R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2179R-Insertion-2 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 857; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 857; E-Value: 0
Query Start/End: Original strand, 9 - 979
Target Start/End: Complemental strand, 38710090 - 38709111
Alignment:
| Q |
9 |
atcaatgtgttagagtttgttatatcaaatcaaagaatgtcgcatcagaggctgacaaggccggacactcataagctacaaacaaaggcagctcagaagc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38710090 |
atcaatgtgttagagtttgttatatcaaatcaaagaatgtcgcatcagaggctgacaaggccggacactcataagctacaaacaaaggcagctcagaagc |
38709991 |
T |
|
| Q |
109 |
cagcacctgagatagctcaaggtatggtttctgactctgtccctgtccct------cacctacttctgaacaaactaacccttcactaaagcatctaaca |
202 |
Q |
| |
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| T |
38709990 |
taacacctgagatagctcaaggtatggtttctgactctgtccctgtccctgtccctcacctacttctgaacaaaccaacccttcactaaaacatctaaca |
38709891 |
T |
|
| Q |
203 |
tctgatgtggtaatcccactaacagttgttcaacaccatgaaaccatacaagtgtgtagtaattcaccagaggactcttgtagaatggtttattaaagtc |
302 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38709890 |
tctgatgtggtaatcccactaacagttgttcaacaccatgaaaccatagaagtgtgtagtaattcaccagaggactcttgtagaatggtttattaaagtc |
38709791 |
T |
|
| Q |
303 |
cttaagagaatggatgtagttgatctcataaagaattttgccaggaaaatagaggttcccagaccacctaccattgcagatactacattcaatcaaaatc |
402 |
Q |
| |
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||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
38709790 |
cttaagaaaatggatttagttgatctcataaagaattttgccaggaaaatagaggttcccagaccacctaccattgcagataccacattcaatcaaaatc |
38709691 |
T |
|
| Q |
403 |
ttaaggcattaggtttattggtcatttatatgctttagaagtacacatggatcaattaaatacctttcgaagtattagttcatgggtgcaatcgatatct |
502 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38709690 |
ttaaggcattaggtttattggtcatttatatgctttagaagtacacatggatcaattaaatacctttcgaagtattagttcatgggtgcaatcgatatct |
38709591 |
T |
|
| Q |
503 |
tttagaagtattagttcatggtataataaaaagaaatgatgtccgatagataagtcctggaggttcagatcgaattgctagatatatgatatttcatagt |
602 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38709590 |
tttagaagtattagttcatggtataataaaaagaaatgatgtccgatagataagtcctggaggttcagatcgaattgctagatatatgatatctcatagt |
38709491 |
T |
|
| Q |
603 |
tataacccgagacatatctactaaattgattcccttaaaagttaaaacatatttgagggccaaaagaactaataaaagagatacttgtgaatatgtttgc |
702 |
Q |
| |
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| T |
38709490 |
tataacccgagacatatctactaaattgattcccttaaaagttaaaacatatttgagggccaaaagaactaataaaagagatacttgtgaatatgtttgc |
38709391 |
T |
|
| Q |
703 |
aagctcgatgcattcaagaactaaagtgacatagcccaagacattcacttaaaaacttagttacaactaataaagcctaatcttcgatttcatcatcacc |
802 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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|
| T |
38709390 |
aatttcgatgcattcaagaactaaagtgacatagcccaagacattcacttaaaaacttagttacaactaataaagcttaatcttccgtttcatcatcacc |
38709291 |
T |
|
| Q |
803 |
aatgacctcatatccattttcaccgacagtttttggtcaagttggtatccgtatcaaaatatctgacttcatcccagtttcagcattaacaatccctcca |
902 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
38709290 |
aatgacctcatatccattttcaccgacagtttttggtcaagttggtatctgtatcaaaatatctgacttcaccccagtttcagcattaacaatctctcca |
38709191 |
T |
|
| Q |
903 |
ttcttttcaacatggtatgacaagtcacttccctta-gaccaacatc-atgtatacagttgtg-tctcatcaattttttc |
979 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||| |
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|
| T |
38709190 |
ttcttttccacacggtatgacaagtcacttcccttaggaccaacatcaatgtatacagttgtgttctcatcaattttttc |
38709111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 772 - 939
Target Start/End: Complemental strand, 10047358 - 10047191
Alignment:
| Q |
772 |
ataaagcctaatcttcgatttcatcatcaccaatgacctcatatccattttcaccgacagtttttggtcaagttggtatccgtatcaaaatatctgactt |
871 |
Q |
| |
|
||||||| || ||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||| | |||||||| | ||||||||||||||||| |
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| T |
10047358 |
ataaagcttactcttccatttcatcatcgccaatgacctcatatccattttcaccgacaatttttggtccatttggtatctgaatcaaaatatctgactt |
10047259 |
T |
|
| Q |
872 |
catcccagtttcagcattaacaatccctccattcttttcaacatggtatgacaagtcacttcccttag |
939 |
Q |
| |
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|| ||||||||||||||| |||||||||||||||||||| ||| ||||| ||| ||||||||||||| |
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| T |
10047258 |
caccccagtttcagcatttacaatccctccattcttttcgacacggtataccaaatcacttcccttag |
10047191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 846 - 939
Target Start/End: Complemental strand, 45468976 - 45468883
Alignment:
| Q |
846 |
ggtatccgtatcaaaatatctgacttcatcccagtttcagcattaacaatccctccattcttttcaacatggtatgacaagtcacttcccttag |
939 |
Q |
| |
|
|||||| | ||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| |||||| ||| || |||||||||| |
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| T |
45468976 |
ggtatctgaatcaatatatcagacttcaccccagtttcagcattaacaatccctccattcttttctacacggtatgccaaatcgcttcccttag |
45468883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 644 - 717
Target Start/End: Complemental strand, 535818 - 535745
Alignment:
| Q |
644 |
ttaaaacatatttgagggccaaaagaactaataaaagagatacttgtgaatatgtttgcaagctcgatgcattc |
717 |
Q |
| |
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|||||||| |||||||| ||||| ||||||||| ||| |||||||||||||||||||| ||||| ||||| |
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| T |
535818 |
ttaaaacaaatttgaggaccaaagtgactaataaattagacacttgtgaatatgtttgcaatttcgatacattc |
535745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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