View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2179R-Insertion-3 (Length: 985)
Name: NF2179R-Insertion-3
Description: NF2179R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2179R-Insertion-3 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 182 - 895
Target Start/End: Original strand, 7101740 - 7102439
Alignment:
| Q |
182 |
attacaatatattttttacattctttcgtaatgctcccaaatttcgtgatgtcatgaaaacctctatggatgtagtccaccatctccttcgtaccaaggt |
281 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
7101740 |
attacaatattttttttacattctttcataatgctcccaaatttcgtgatgtcatgaaaagctctatggatttagtccaccatctccttcgtaccaaggt |
7101839 |
T |
|
| Q |
282 |
caaaataacagtttgcagccgtaaatcatgaactcaagtaatagcatagttaagactcaaagagtgagccaaagagttttggcaagaagaaaactcgtga |
381 |
Q |
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|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7101840 |
caaaataaaagtttgcagctgtaaatcatgaactcaagtaatagcatagttaagactcaaagagtgagccaaagagttttagcaagaagaaaactcgtga |
7101939 |
T |
|
| Q |
382 |
gttcatcttgaatgcccatatccacgtcctctcgcctttgaatatcgatggaaaccccata-ttcaactctctaaacatgaggcttatccatcaaaatca |
480 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
7101940 |
gttcatcttgaatgcccatatccacgtc--ctcgcctttgaatatcgatggaaaccccatatttcaactctctaaacatgaggcttatccatcaaaatca |
7102037 |
T |
|
| Q |
481 |
tagtaggtagttatgttttcatgcctaatataaactggttattaacttttgaaaac-nnnnnnnnataaacttttttctacaaacttttgatgtcaactt |
579 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
7102038 |
tagtaggtagttatgttttcatgcctaatataaactgg---ttaacttttgaaaactttttttttataaacttttttttacaaacttttgatgtcaactt |
7102134 |
T |
|
| Q |
580 |
aaaatgtagacgatgtgttccaatacttaaatttaaaaataaacaccataatctttc---nnnnnnnnnnnnnnnnnnntatacacagttatggccgcaa |
676 |
Q |
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| T |
7102135 |
aaaatgtagacgatgtgttccaatacttaaatttaaaaataaacaccataatctttcaaaaaaaaaaaaagtaaaaaaatatacatcgttatggccgcaa |
7102234 |
T |
|
| Q |
677 |
cccaatttgttatagtttattatccttcatccaccaatttggtcgcagattaatcccctcatttttagcaaatttgtattgtacgaatatagtctattaa |
776 |
Q |
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| T |
7102235 |
cccaatttgttatagtttattatccttcatccaccaatttggtcgcagatcaatcccctc-----------atttgtattgtatcaatatagtctattaa |
7102323 |
T |
|
| Q |
777 |
tttaaatgaatatcatttatttttaaacgctatatgctaacnnnnnnnnnnagacactagaacattctgcatcacttcacttatttgtacattttagaac |
876 |
Q |
| |
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| T |
7102324 |
tttaaatgaatatcatttatttttaaacgctatatgctaac---tttttttagataccggaacattctgcatcacttcacttatttgtacattttagaac |
7102420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 9 - 185
Target Start/End: Original strand, 7101499 - 7101675
Alignment:
| Q |
9 |
aaagtaaggagtttataactaaatttatagtttatgcttgagcatgatgaatgacatgggagtgtttcttttacggagaataagcttatagcatgtcatt |
108 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7101499 |
aaagtaaggactttataactaaatttatagtttatgcttgagcatggtgaatgacatgggagtgtttcttttacagagaataagcttatagcatgtcatt |
7101598 |
T |
|
| Q |
109 |
agaaattaatgtgtaaataaatggcggaacatcactataagtgtgggagatagttgataatgtgactacccacatta |
185 |
Q |
| |
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| T |
7101599 |
agaaattaaagtgtaaataaatggcggaacatcactataagtgtgggagatagttgataatgcgactatccacatta |
7101675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 919 - 972
Target Start/End: Original strand, 7102445 - 7102501
Alignment:
| Q |
919 |
taagaaaaataggg-atgcaaatagta-tttaatgcacacatatg-aaagcataaaa |
972 |
Q |
| |
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| T |
7102445 |
taagaaaaataggggatgcaaatagtaatttaatgcacacatatgaaaagcataaaa |
7102501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 340
Target Start/End: Complemental strand, 40435662 - 40435535
Alignment:
| Q |
211 |
aatgctcccaaatttcgtgatgtcatgaaaacctctatggatgtagtccaccatctccttcgtaccaaggtcaaaat-aacagtttgcagccgtaaatca |
309 |
Q |
| |
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|||||||| ||||||| |||||||| | ||||||||| | |||||||||||||| | | | || | ||||||| |||| ||||||| |||||||| |
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| T |
40435662 |
aatgctcctaaatttcacgatgtcattacgacctctatgaaagtagtccaccatct---ttgaatcatgatcaaaattaacattttgcagttgtaaatca |
40435566 |
T |
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| Q |
310 |
tgaactcaagtaatagcatagttaagactca |
340 |
Q |
| |
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| T |
40435565 |
tgaaccaaaataatagcatagttaagactca |
40435535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 737 - 787
Target Start/End: Complemental strand, 12524399 - 12524349
Alignment:
| Q |
737 |
atttttagcaaatttgtattgtacgaatatagtctattaatttaaatgaat |
787 |
Q |
| |
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||||||||| |||||||||||| ||||||| ||||| ||||||||||||| |
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| T |
12524399 |
atttttagcgaatttgtattgtttgaatataatctatcaatttaaatgaat |
12524349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 738 - 799
Target Start/End: Original strand, 51742184 - 51742245
Alignment:
| Q |
738 |
tttttagcaaatttgtattgtacgaatatagtctattaatttaaatgaatatcatttatttt |
799 |
Q |
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| T |
51742184 |
tttttggcgaatttgtattgtatcaatatactctatcaatttgaatgaatatcattaatttt |
51742245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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