View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2179R-Insertion-4 (Length: 852)
Name: NF2179R-Insertion-4
Description: NF2179R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2179R-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 9 - 418
Target Start/End: Original strand, 4173486 - 4173891
Alignment:
| Q |
9 |
tcattctcatttggacttggaaagtttgatgtttttaaacttaacgagttattctttaagaaagatgtacataaccgccaaataatcttttcttatgtaa |
108 |
Q |
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| T |
4173486 |
tcattctcatttggacttggaaagtttaatgtttttaaacttaacgagttattctttaagaaagatgtacataaccgccaaataatcttttcttatgtaa |
4173585 |
T |
|
| Q |
109 |
actatggtattttatttgtttgtacgtaatgcaaattannnnnnnccttgtaaatacttcccctgcagattgagtaatttaatggatcatgtgcattgca |
208 |
Q |
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| T |
4173586 |
actatggtattttatttgtttgtacgtaatgcaaattatttttt-ccttgtaaatacttcccctgcagattgagtaatttaatggatcatgtgcattgca |
4173684 |
T |
|
| Q |
209 |
atgttggctcccaaagccatagctcacaaatttaacttatttgatgaaaatagtttatatattcaagtgtacatacggtagggaaaatagtgaaattcct |
308 |
Q |
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| T |
4173685 |
atgttggctcccaaagccat---tcacaaatttaacttatttgatgaaaatagtttatatattcaagtgtacatacggtagggaaaatagtgaaattcct |
4173781 |
T |
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| Q |
309 |
taactcttgacatcacaacaatgtctttcattgtgtcaaccttgattttcatctttgcagactctcggtagtaaaattagtgtgctccagcaatggacca |
408 |
Q |
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| T |
4173782 |
taactcttgacatcacaacaatgtctttcattgtgtcaaccttgattttcatctttgtagactctcggtagtaaaattagtgtgctccagcaatggacca |
4173881 |
T |
|
| Q |
409 |
agccttgcta |
418 |
Q |
| |
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| T |
4173882 |
agccttgcta |
4173891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 299 - 437
Target Start/End: Original strand, 4170058 - 4170196
Alignment:
| Q |
299 |
tgaaattccttaactcttgacatcacaacaatgtctttcattgtgtcaaccttgattttcatctttgcagactctcggtagtaaaattagtgtgctccag |
398 |
Q |
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| T |
4170058 |
tgaaattccctaactcttgacatcacaacaatgtctttcattgtgtcagccttgattttcatctttgtagactctcgctagtaaaatttgtgtgctccag |
4170157 |
T |
|
| Q |
399 |
caatggaccaagccttgctagcttaggtatgacaatatt |
437 |
Q |
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| T |
4170158 |
caatggaccaagccttattagcttaggtatgacaatatt |
4170196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 4179070 - 4179134
Alignment:
| Q |
159 |
taaatacttcccctgcagattgagtaatttaatggatcatgtgcattgcaatgttggctcccaaa |
223 |
Q |
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| T |
4179070 |
taaatacttcccctgcagattgattaacttaatggatcatgtgcattgcaatgttggctcccaaa |
4179134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 488 - 533
Target Start/End: Complemental strand, 4173974 - 4173930
Alignment:
| Q |
488 |
aaaaaattccagagtatatgatgttgaaacttatatatccgtcccc |
533 |
Q |
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| T |
4173974 |
aaaaaattcc-gagtatatgatattgaaacttatatatccgtcccc |
4173930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 7e-33; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 571 - 667
Target Start/End: Original strand, 36600509 - 36600605
Alignment:
| Q |
571 |
ctctaaagcaattttaactgtataacaaatttcaaggattactacatttacacactccttctatgtgatctatccaagacatttttactcactcttt |
667 |
Q |
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|||||||||||| ||||||| ||||||||||||| || ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36600509 |
ctctaaagcaatcttaactgcataacaaatttcaggggttattacatttacacactccttctatgtcatctatccaagacatttttactcactcttt |
36600605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 757 - 852
Target Start/End: Original strand, 36600721 - 36600814
Alignment:
| Q |
757 |
gaacaaaaataaggtatcattataattgtttcatttataataatatttctacgacgcaaattaattgttactttaaactcctaatgaaacattaag |
852 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||||||| ||| |||| |||| |||||||||| |||||||||||||||| |
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| T |
36600721 |
gaacaaaaataaggcatcattataaccgtttcatttataataatatttctatgactcaaactaatcattactttaaa--actaatgaaacattaag |
36600814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 447 - 571
Target Start/End: Original strand, 36600334 - 36600459
Alignment:
| Q |
447 |
aactaagtacacagaattagggaaactcaccaccc-aaaggtaaaaaattccagagtatatgatgttgaaacttatatatccgtc-ccctccagagatgg |
544 |
Q |
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| T |
36600334 |
aactaagtacatagaattaggggcactcgccaccccaaaggaaaaaaaatctt-aggatatgatattgaaacttatatatccctctccctacagagctag |
36600432 |
T |
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| Q |
545 |
gcacttacgttagttattcaaatttac |
571 |
Q |
| |
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||||||| ||||||||| |||||||| |
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| T |
36600433 |
gcacttatgttagttatctaaatttac |
36600459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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