View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2179R-Insertion-5 (Length: 575)
Name: NF2179R-Insertion-5
Description: NF2179R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2179R-Insertion-5 |
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Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 9 - 360
Target Start/End: Original strand, 7181180 - 7181527
Alignment:
| Q |
9 |
aactctaatttgatatacaactatttgaaagaattggtaacatggtgaaacaaaattattttctcttcaaattccccatatatagaatagaaggggattg |
108 |
Q |
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| T |
7181180 |
aactctaatttgatatacaacaatttgaaagatttggtaacatggtgaaacaaaattattttctcttcaaattccccatatatagaa-----gggggttg |
7181274 |
T |
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| Q |
109 |
tagattctattaaaaccacttcttggaggtgattccttgctagagnnnnnnnnn-gaccttgtatatattttgaatggtttttaaaccctcttctttgtc |
207 |
Q |
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| T |
7181275 |
tagattcgattaaaaccacttcttggaggtgattccttgctagagaaaaaaaaaagaccttgtatatattttgaatggtttttcaaccctcttctttgtc |
7181374 |
T |
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| Q |
208 |
taaactcctagtttatgaggttatttttagtggttaaagtatctcttatactttttccgatttgtgggttatgtattctttatattgctatatggtattc |
307 |
Q |
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| T |
7181375 |
taaactcctagtttatgaggttatttttagtggttaaagtatctcttatactttttccgacttgtgggttatgtattctttatattgctatatggtattc |
7181474 |
T |
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| Q |
308 |
aataaattttgttattnnnnnnntaatctgctataggtagaaggaacccttac |
360 |
Q |
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| T |
7181475 |
aataaattttgttattaaaaaaataatctgctataggtagaaggaacccttac |
7181527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 382 - 575
Target Start/End: Original strand, 7181713 - 7181912
Alignment:
| Q |
382 |
tgttagatggaagagttgtgtttataaatagagcaata------gccagaccaataatatgaaccatatatagaggagaggaggtacaatattaatcagt |
475 |
Q |
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| T |
7181713 |
tgttagatggaaaagttgtgtgtataaatagagcaatattaatagccagaccaataatatgaaccatatatagaggagaggaggtacagtattaatcagt |
7181812 |
T |
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| Q |
476 |
ccattcatgcatgcaaggaattggtcccttgatagctacgtatagaaccgagacttgatgagttttgagaaaaataactggtggtgttgttttttgtgat |
575 |
Q |
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| T |
7181813 |
ccattcatgcatgcaaggaattggtcccttgatagctacgtatagaaccgagacttgatgagttttgagaaaaataactggtggtgttgtttgttgtgat |
7181912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 388 - 518
Target Start/End: Original strand, 7193361 - 7193491
Alignment:
| Q |
388 |
atggaagagttgtgtttataaatagagcaatagcc----agaccaataatatgaaccatatatagaggagaggaggtacaatattaatcagtccattcat |
483 |
Q |
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| T |
7193361 |
atggaagagctgtatgtataaatagagcaatagccagccagaccaataataggaaccacatatagaggagaggaagtacgatattaactagtccactcat |
7193460 |
T |
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| Q |
484 |
gcatgcaaggaattggtcccttgatagctacgtat |
518 |
Q |
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| T |
7193461 |
gcat----ggaaatggtccctagatagctacgtat |
7193491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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