View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2179R-Insertion-9 (Length: 264)
Name: NF2179R-Insertion-9
Description: NF2179R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2179R-Insertion-9 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 9 - 263
Target Start/End: Complemental strand, 30512171 - 30511914
Alignment:
| Q |
9 |
atataaaacaataatttcattttagaaaattcataagtaaaacgttttatatatttttctagtgattgaatttttctagtaagatggtgtgtaacta--- |
105 |
Q |
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| T |
30512171 |
atataaaacaataatttcattttagaaaattcataagtaaaatgttttatatattttgctagtgattgaatttt-cttgtaagatggtgtgtaattaaat |
30512073 |
T |
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| Q |
106 |
-tgcgtaaaattctttagaatctactcctacaaactaagaattcatcacttctggttcatgtgatatccaagtcatactaatctacccacgaggaagaaa |
204 |
Q |
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| T |
30512072 |
gtgcgctaaattctttagaatctactcccacaaactaagatttcatcacttcaggttcatgtgatatacaagtcatactaatctacttacgaggaagaaa |
30511973 |
T |
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| Q |
205 |
tcatgatgattgaaccttgtcgaatggcagagttgctacatcatcagtgccacattagc |
263 |
Q |
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| T |
30511972 |
tcatgatgattgaaccttgccgaatggcagagttgctacatcatcagtgccacattagc |
30511914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 30534189 - 30534118
Alignment:
| Q |
12 |
taaaacaataat-ttcattttagaaaattcataagtaaaacgttttatatatttttctagtgattgaatttt |
82 |
Q |
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| T |
30534189 |
taaaacaataatcttcattttagaacattcatacgtaaaaagttctatatatttttctagtgactgaatttt |
30534118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 30495196 - 30495140
Alignment:
| Q |
26 |
cattttagaaaattcataagtaaaacgttttatatatttttctagtgattgaatttt |
82 |
Q |
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| T |
30495196 |
cattttagaaaattcataagtaaaaagttctgtatatttttctagtaattgaatttt |
30495140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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