View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2179_high_11 (Length: 270)
Name: NF2179_high_11
Description: NF2179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2179_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 2226870 - 2226771
Alignment:
| Q |
1 |
atatatcacaatttcaagattcataccacataaagtaaagaaactgggccactgaaaactagtgcaacagaaaaattagatagtaaatgcatctaaaact |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2226870 |
atatatcacaatttcatgattcataccacataaagtaaagaaactgggccactgaaaactagtgcaacagaaaaattagatagtaaatgcatctaaaact |
2226771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 2226689 - 2226619
Alignment:
| Q |
182 |
ctctcttgaagaagaaacaccgcgaatcaacctacgaacggcatatcggacggaaggagcacattcatcta |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2226689 |
ctctcttgaagaagaaacaccgcgaatcaacctacgaaaggcatatcggacggaaggagcacattcatcta |
2226619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University