View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2179_high_6 (Length: 305)
Name: NF2179_high_6
Description: NF2179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2179_high_6 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 6499652 - 6499937
Alignment:
| Q |
17 |
agaatatatgtaacaaacaagtaccttgtgataaagtagtaccattggtagtggctggtggaggagatgatgatggcggcggtggcggcggcgatgctct |
116 |
Q |
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| T |
6499652 |
agaatatatgtaacaaacaagtaccttgtgataaagtagtaccattcgtagtggctggtggaggaggtgatgatggcggcggtggcg---gcgatgctct |
6499748 |
T |
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| Q |
117 |
aggctcataaaaaaggtaagaagtttcaaatctcatgttacaactaggcctaacaactcttccaccaatcttattattacaacaactaggaatttgttga |
216 |
Q |
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| T |
6499749 |
aggctcataaaaaaggtaagaagtttcaaatctcatgttacaactaggcctaacaactcttccaccaatcttattattacaacaactaggaatttgttga |
6499848 |
T |
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| Q |
217 |
agattctcaaccaaacatgaattacaatcagtttcagacaaatcaggtgtacattgaaccaaaccatatataacttcatactgaggacc |
305 |
Q |
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| T |
6499849 |
agattctcaaccaaacatgaattacaatcagtttcagacaaatcaggtgtacattgaaccaaaccatatataacttcatactgaggacc |
6499937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 139 - 201
Target Start/End: Complemental strand, 6524140 - 6524078
Alignment:
| Q |
139 |
gtttcaaatctcatgttacaactaggcctaacaactcttccaccaatcttattattacaacaa |
201 |
Q |
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| T |
6524140 |
gtttcaaatctcatgttacaactaggcctaacaactcttccacctttcttatctttacaacaa |
6524078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 287
Target Start/End: Complemental strand, 6524051 - 6523989
Alignment:
| Q |
225 |
aaccaaacatgaattacaatcagtttcagacaaatcaggtgtacattgaaccaaaccatatat |
287 |
Q |
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| T |
6524051 |
aaccaaacatgaattacaatctgactcagataaatcaggcgtacactgaacaagaccatatat |
6523989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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