View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2179_low_1 (Length: 564)
Name: NF2179_low_1
Description: NF2179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2179_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 17 - 550
Target Start/End: Complemental strand, 29607651 - 29607118
Alignment:
| Q |
17 |
ataattgttcatcattcaattccatacatatgaaataattttatatttttgcaaaccaaataaccgtttcgctcgaatccatgttttgtcatatgagcat |
116 |
Q |
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| T |
29607651 |
ataattgttcatcattcaattccatacatatgaaataattttatatttttgcaaaccaaataaccgtttcgcttgaatccatgttttgtcatatgagcat |
29607552 |
T |
|
| Q |
117 |
cttctgcagttactcaagtgacacataacaaaatggcaatagcaattccaccagttgccaacatctttctccattgcccttggtaagattgtgcaccatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29607551 |
cttctgcagttactcaagtgacacataacaaaatggcaatagcaattccaccagttgccaacatctttctccattgcccttggtaagattgtgcaccatt |
29607452 |
T |
|
| Q |
217 |
ctgtgaaacataaaatcataagattcgataaaagaagctttagcaagttttgccaagtcagagtacaatctgtctgataaagatcagatgacaaagattg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29607451 |
ctgtgaaacataaaatcataagattcgataaaagaagctttagcaagttttgccaagtcagagtacaatctgtctgataaagatcagatgacaaagattg |
29607352 |
T |
|
| Q |
317 |
catgaattcgttaatgcggcataatccagaccaaagaggtccgtaaatatagaattgtaacttaaagtaaaatggaaaaggatattaccgcactgggact |
416 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
29607351 |
catgaattcgttaatgcggcatgatccagaccaaagaggtccgtaaatatagaattgtaacttaaagtaaaatggaaaaagatattaccgcactgggact |
29607252 |
T |
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| Q |
417 |
gggtgctggtgacggtccttcatctgaactcattgtagtattatcatcagccagtggtgctgggggactcctcctaatgattgttgaacttgaacttgta |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29607251 |
gggtgctggtgacggtccttcatctgaactcattgtagtattatcatcagccagtggtgctgggggactcctcctaatgattgttgaacttgaacttgta |
29607152 |
T |
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| Q |
517 |
ggctctggtgctagagctagtgcgtgatgtttct |
550 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
29607151 |
ggctctggtgctagagctagtgcgtgatgtttct |
29607118 |
T |
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