View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2179_low_13 (Length: 237)

Name: NF2179_low_13
Description: NF2179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2179_low_13
NF2179_low_13
[»] chr6 (11 HSPs)
chr6 (1-222)||(31190020-31190241)
chr6 (52-222)||(31145962-31146132)
chr6 (72-222)||(31201827-31201977)
chr6 (104-222)||(31172275-31172393)
chr6 (104-207)||(31224011-31224114)
chr6 (116-222)||(30960518-30960624)
chr6 (113-222)||(30944510-30944619)
chr6 (113-198)||(30954770-30954855)
chr6 (113-213)||(30985833-30985933)
chr6 (113-213)||(30991997-30992097)
chr6 (123-222)||(31131713-31131811)


Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 31190241 - 31190020
Alignment:
Q  1 ctctttatcaggtggtgtaagtgcagctgtgagcgtattcttaatctacttcattatctatttgtttggatgcaaattatcaatatggcaaggaaaattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  31190241 ctctttatcaggtggtgtaagtgcagctgtgagcgtattcttaatctacttcattctctatttttttggatgcaaattatcaatatggcaaggaaaattt 31190142  T
Q  101 caatttagaactaagaatgatacaaatattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattcagaactaaagaaaatga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31190141 caatttagaactaagaatgatacaaatattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattcagaactaaagaaaatga 31190042  T
Q  201 cagactctttcaaggttaaact 222  Q
    ||||||||||||||||||||||    
T  31190041 cagactctttcaaggttaaact 31190020  T

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Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 52 - 222
Target Start/End: Complemental strand, 31146132 - 31145962
Alignment:
Q  52 cattatctatttgtttggatgcaaattatcaatatggcaaggaaaatttcaatttagaactaagaatgatacaaatattgaagcatttttaaaagatcat 151  Q
    |||||||||||   || || ||||||||| |||| ||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31146132 cattatctattgtcttagaagcaaattattaatacggcaaggaaagcttcagtttagaactaagaatgatacaaatattgaagcatttttaaaagatcat 31146033  T
Q  152 ggagctctattgcagaaaagatataaatattcagaactaaagaaaatgacagactctttcaaggttaaact 222  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31146032 ggagctctattgcagaaaagatataaatattcagaaataaagaaaatgacagactctttcaaggttaaact 31145962  T

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Target: chr6; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 72 - 222
Target Start/End: Complemental strand, 31201977 - 31201827
Alignment:
Q  72 gcaaattatcaatatggcaaggaaaatttcaatttagaactaagaatgatacaaatattgaagcatttttaaaagatcatggagctctattgcagaaaag 171  Q
    |||||| ||||||  | |||||||||||||| | |||||||| |||||| | ||| || ||||||||||||||||||||||||||||| |||||||||||    
T  31201977 gcaaatcatcaattcgacaaggaaaatttcagtgtagaactaggaatgaaaaaaaaatcgaagcatttttaaaagatcatggagctctgttgcagaaaag 31201878  T
Q  172 atataaatattcagaactaaagaaaatgacagactctttcaaggttaaact 222  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||    
T  31201877 atataaatattcagaaataaagaaaatgacaaactctttcaaggttaaact 31201827  T

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Target: chr6; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 104 - 222
Target Start/End: Complemental strand, 31172393 - 31172275
Alignment:
Q  104 tttagaactaagaatgatacaaatattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattcagaactaaagaaaatgacag 203  Q
    |||||||| ||||||||||  ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| ||| ||||||||||||||     
T  31172393 tttagaaccaagaatgataacaatattgaagcatttttaaaagaccatggagctttattgcagaaaagatataaattttctgaaataaagaaaatgacaa 31172294  T
Q  204 actctttcaaggttaaact 222  Q
    |||||||||||||||||||    
T  31172293 actctttcaaggttaaact 31172275  T

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Target: chr6; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 104 - 207
Target Start/End: Original strand, 31224011 - 31224114
Alignment:
Q  104 tttagaactaagaatgatacaaatattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattcagaactaaagaaaatgacag 203  Q
    ||||| || |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||     
T  31224011 tttaggacaaagaatgataaaaacattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattcagaaataaagaacatgacaa 31224110  T
Q  204 actc 207  Q
    ||||    
T  31224111 actc 31224114  T

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Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 30960518 - 30960624
Alignment:
Q  116 aatgatacaaatattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattcagaactaaagaaaatgacagactctttcaagg 215  Q
    ||||||| ||| |||||||||||| |||||||||||||||||||| |||| ||||||||||||| ||||||| |||||||||||||| |||| |||||      
T  30960518 aatgatataaacattgaagcatttctaaaagatcatggagctctactgcaaaaaagatataaattttcagaaataaagaaaatgacaaactcgttcaaaa 30960617  T
Q  216 ttaaact 222  Q
    |||||||    
T  30960618 ttaaact 30960624  T

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Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 30944510 - 30944619
Alignment:
Q  113 aagaatgatacaaatattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattcagaactaaagaaaatgacagactctttca 212  Q
    |||||||||| ||| ||||||| |||||||||||||||| |||| ||||| || ||||||||||||| ||||||| |||||||||||||| |||| ||||    
T  30944510 aagaatgatataaacattgaagaatttttaaaagatcatagagcactattacaaaaaagatataaattttcagaaataaagaaaatgacaaactcattca 30944609  T
Q  213 aggttaaact 222  Q
    |  |||||||    
T  30944610 aaattaaact 30944619  T

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Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 30954770 - 30954855
Alignment:
Q  113 aagaatgatacaaatattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattcagaactaaagaaaat 198  Q
    |||||||||| ||| |||||||||||||||||||| |||||||||||| |||| ||||||||||||| ||||||| ||||||||||    
T  30954770 aagaatgatataaacattgaagcatttttaaaagaccatggagctctagtgcaaaaaagatataaattttcagaaataaagaaaat 30954855  T

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Target: chr6; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 113 - 213
Target Start/End: Original strand, 30985833 - 30985933
Alignment:
Q  113 aagaatgatacaaatattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattcagaactaaagaaaatgacagactctttca 212  Q
    |||||||||| ||| |||||||||||||||||||| ||||||| ||||||||| ||||||||||| | ||||||| |||||||||| ||| |||| ||||    
T  30985833 aagaatgatataaacattgaagcatttttaaaagaccatggagttctattgcaaaaaagatataagttttcagaaataaagaaaattacaaactcattca 30985932  T
Q  213 a 213  Q
    |    
T  30985933 a 30985933  T

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Target: chr6; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 113 - 213
Target Start/End: Original strand, 30991997 - 30992097
Alignment:
Q  113 aagaatgatacaaatattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattcagaactaaagaaaatgacagactctttca 212  Q
    |||||||||| ||| |||||||||||||||||||| ||||||| ||||||||| ||||||||||| | ||||||| |||||||||| ||| |||| ||||    
T  30991997 aagaatgatataaacattgaagcatttttaaaagaccatggagttctattgcaaaaaagatataagttttcagaaataaagaaaattacaaactcattca 30992096  T
Q  213 a 213  Q
    |    
T  30992097 a 30992097  T

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Target: chr6; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 31131811 - 31131713
Alignment:
Q  123 caaatattgaagcatttttaaaagatcatggagctctattgcagaaaagatataaatattcagaactaaagaaaatgacagactctttcaaggttaaact 222  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |  ||| |||||| |||| || |||| ||||||||||||||    
T  31131811 caaatattgaagcatttttaaaagatcatagagctctattgcagaaaagatataaattctttgaaataaagagaatg-caaactcattcaaggttaaact 31131713  T

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