View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2179_low_14 (Length: 213)
Name: NF2179_low_14
Description: NF2179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2179_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 30049434 - 30049252
Alignment:
| Q |
18 |
ccaattgctcttaagaactccaatgatgcagttttacatctccattctgttcagcttctcttatagaatgaaatttgacattgatatgctttgttcttcc |
117 |
Q |
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||||||| |||| |||||| || || |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
30049434 |
ccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttcc |
30049335 |
T |
|
| Q |
118 |
atgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcctcttgtacatgattca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30049334 |
atgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcctcttgtacatgattca |
30049252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 7162387 - 7162205
Alignment:
| Q |
18 |
ccaattgctcttaagaactccaatgatgcagttttacatctccattctgttcagcttctcttatagaatgaaatttgacattgatatgctttgttcttcc |
117 |
Q |
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||||||| |||| |||||| || || |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
7162387 |
ccaattgttcttcagaactgcagtgctgcaattttacatctccattctgttcagcttctcttatagcatgaaatttgacattgatatgctttgctcttcc |
7162288 |
T |
|
| Q |
118 |
atgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcctcttgtacatgattca |
200 |
Q |
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| T |
7162287 |
atgttgaattggatttttggcagttgctatagctgatttgttgtcacaccatagcacaattggttcctcttgtatatgattca |
7162205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 196581 - 196763
Alignment:
| Q |
18 |
ccaattgctcttaagaactccaatgatgcagttttacatctccattctgttcagcttctcttatagaatgaaatttgacattgatatgctttgttcttcc |
117 |
Q |
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||||||| |||| |||||| || || |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
196581 |
ccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttcc |
196680 |
T |
|
| Q |
118 |
atgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcctcttgtacatgattca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
196681 |
atgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcctcttgtacatgattca |
196763 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 3945688 - 3945506
Alignment:
| Q |
18 |
ccaattgctcttaagaactccaatgatgcagttttacatctccattctgttcagcttctcttatagaatgaaatttgacattgatatgctttgttcttcc |
117 |
Q |
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||||||| |||| |||||| || || |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3945688 |
ccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttcc |
3945589 |
T |
|
| Q |
118 |
atgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcctcttgtacatgattca |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3945588 |
atgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcctcttgtacatgattca |
3945506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 22365316 - 22365134
Alignment:
| Q |
18 |
ccaattgctcttaagaactccaatgatgcagttttacatctccattctgttcagcttctcttatagaatgaaatttgacattgatatgctttgttcttcc |
117 |
Q |
| |
|
||||||| |||| |||||| || || |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22365316 |
ccaattgttcttcagaactgcagtgctgcaattttacatctccattctgttcagcttctcttatagcatgaaatttgacattgatatgctttgttcttcc |
22365217 |
T |
|
| Q |
118 |
atgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcctcttgtacatgattca |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22365216 |
atgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcctcttgtacatgattca |
22365134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 22135264 - 22135200
Alignment:
| Q |
71 |
gcttctcttatagaatgaaatttgacattgatatgctttgttcttccatgttgaattggattttt |
135 |
Q |
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||||||||||| | ||| ||||| |||||||| ||||| ||||| ||||| |||| ||||||||| |
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| T |
22135264 |
gcttctcttatggcatggaattttacattgatgtgcttagttctaccatgctgaactggattttt |
22135200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 39949742 - 39949924
Alignment:
| Q |
18 |
ccaattgctcttaagaactccaatgatgcagttttacatctccattctgttcagcttctcttatagaatgaaatttgacattgatatgctttgttcttcc |
117 |
Q |
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|
||||||| |||| |||||| || || |||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
39949742 |
ccaattgttcttcagaactgcagtgctgcagttttacatctccattttgttcagcttctcttatagcatgaaattttacattgatatgctttgttcttcc |
39949841 |
T |
|
| Q |
118 |
atgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcctcttgtacatgattca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39949842 |
atgttgaattggatttttggcaattgctatagctgatttgttgtcacaccatagcacaattggttcctcttgtacatgattca |
39949924 |
T |
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