View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2179_low_16 (Length: 201)
Name: NF2179_low_16
Description: NF2179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2179_low_16 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 8434647 - 8434471
Alignment:
| Q |
18 |
gataagcaactttcctccagctttgtttactactgacctatgggctatttttgt-gtgtgttggggttgagaacttatacagggcgatcgatatacaaat |
116 |
Q |
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| T |
8434647 |
gataagcaactatcctccagctttgtttactactgacctatgggctattttttttgtgtgttggggttgagaacttatacagggcgatcgatatacaaat |
8434548 |
T |
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| Q |
117 |
ttgaaattttttaaatttg-------taatctgttgttctttataacttcttgtactcttaatttctggagcctatg |
186 |
Q |
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| T |
8434547 |
ttgaaattttttaaatttgtaatttgtaatctgttgttctttataacttcttgtactcttaatttctggagtctatg |
8434471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 175
Target Start/End: Complemental strand, 8431631 - 8431525
Alignment:
| Q |
76 |
gttggggttgagaacttatacagggcgatcgatatacaaatttgaaattttttaaatttgtaa-------tctgttgttctttataacttcttgtactct |
168 |
Q |
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| T |
8431631 |
gttggggttgagaacttataggcggtgactgacatacaaatttgaaattttttaaatttgtaatctgcattctgttgctctctataacttcttgtactcc |
8431532 |
T |
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| Q |
169 |
taatttc |
175 |
Q |
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| T |
8431531 |
taatttc |
8431525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 75788 - 75953
Alignment:
| Q |
18 |
gataagcaactttcctccagctttgtttactactgacctatgggctatttttgtgtgtgttggggttgagaacttatacagggcgatcgatatacaaatt |
117 |
Q |
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|||| |||||| ||||| |||||||||||| || ||||||||| |||||||| |||| ||||||||||||||||||||||||||||| || || |||||| |
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| T |
75788 |
gataggcaactatcctctagctttgtttacgaccgacctatggtctatttttttgtgagttggggttgagaacttatacagggcgattgagatgcaaatt |
75887 |
T |
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| Q |
118 |
tgaaatttttta-------aatttgtaatct-gttgttctttataacttcttgtactcttaatttc |
175 |
Q |
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| T |
75888 |
tgaaattttttaaattcgtaatttgtaatctggttgttctttataacttcttgtactcttaatttc |
75953 |
T |
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