View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2179_low_2 (Length: 407)
Name: NF2179_low_2
Description: NF2179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2179_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 16 - 390
Target Start/End: Original strand, 1568737 - 1569111
Alignment:
| Q |
16 |
atgagagtgaaagccaaaggaaaaacgcaactaactcctagagatcaccttaaaagcatgtcatatagtctcttgtcctaatttaacatcaaccttaagt |
115 |
Q |
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| T |
1568737 |
atgagagtgaaagccaaaggaaaaacgcaactaactcctagagatcaccttcaaagcatgtcatatagtctcttgtcctaatttaacatcaaccttaagt |
1568836 |
T |
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| Q |
116 |
catctaaacggagaacacacaaccaggtgatatcagagatatatatattatagtaaacatgaaatactaataaacaaaatttacttgctggtctttttca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1568837 |
catctaaacggagaacacacaaccaggtgatatcagagatatatatattatagtaaacatgaaatactaataaacaaaatttacttgctggtctttttca |
1568936 |
T |
|
| Q |
216 |
gtaacaaaagaaagaacaacggaaagaaacgtgtcacagtacttcatagtaaatcacctaccagattaaattactatgtccttcatcttctagcggatat |
315 |
Q |
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| T |
1568937 |
gtaacaaaagaaagaacaacggaaagaaacgtgccacagtacttcatagtaaatcacctaccagattaaattactatgtccttcatcttctagcggatat |
1569036 |
T |
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| Q |
316 |
aacttttgcaaatacatgaactagcacatattggcaatatatatatgtagtcaatagtatgtcatattgcattat |
390 |
Q |
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| T |
1569037 |
aacttttgcaaatacatgaactagcacatattggcaatatatatatgtagtcaatagtatgtcatattgcattat |
1569111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 174 - 356
Target Start/End: Original strand, 1561837 - 1562024
Alignment:
| Q |
174 |
atgaaatactaataaacaaaatttacttgctggtctttttcagtaacaaaagaaag----------aacaacggaaagaaacgtgtcacagtacttcata |
263 |
Q |
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| T |
1561837 |
atgaaatactaataaacaaaatttacttgctggtctttttcaggaacaaaagaaagtcgtctctagaacaaccgaaagaaacgtgccac-----ttcata |
1561931 |
T |
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| Q |
264 |
gtaaatcacctaccagattaaattactatgtccttcatcttctagcggatataacttttgcaaatacatgaactagcacatattggcaatata |
356 |
Q |
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| T |
1561932 |
ggaaatgacctaccagattaaattactatgtccttcatcttctaggggatataacttttgcaaatacacaaagtagcacatattggcaatata |
1562024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 174 - 356
Target Start/End: Original strand, 2092292 - 2092479
Alignment:
| Q |
174 |
atgaaatactaataaacaaaatttacttgctggtctttttcagtaacaaaagaaag----------aacaacggaaagaaacgtgtcacagtacttcata |
263 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||| |||||||| ||||| |||||| |
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| T |
2092292 |
atgaaatactaataaacaaaatttacttggtggtctttttcagaaacaaaagaaagtcttctctagaacaaatgaaagaaagacgtcac-----ttcata |
2092386 |
T |
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| Q |
264 |
gtaaatcacctaccagattaaattactatgtccttcatcttctagcggatataacttttgcaaatacatgaactagcacatattggcaatata |
356 |
Q |
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| T |
2092387 |
gtaaatcaccaaccagattaaattactatgtccttcatcttctaagggatataacttttgtaaatacaaaaagtagcacatattggcaatata |
2092479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 1560995 - 1561028
Alignment:
| Q |
126 |
gagaacacacaaccaggtgatatcagagatatat |
159 |
Q |
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| T |
1560995 |
gagaacacacaaccagctgatatcagagatatat |
1561028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 2091464 - 2091496
Alignment:
| Q |
127 |
agaacacacaaccaggtgatatcagagatatat |
159 |
Q |
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| T |
2091464 |
agaacacacaaccagctgatatcagagatatat |
2091496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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