View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2179_low_4 (Length: 359)
Name: NF2179_low_4
Description: NF2179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2179_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 18 - 344
Target Start/End: Complemental strand, 34573532 - 34573206
Alignment:
| Q |
18 |
agtcatattataaactagatgctgaccacaagacatggattattagacaaaaataattccgtcagaggatacttgaaaatatactttagtcattttgaaa |
117 |
Q |
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| T |
34573532 |
agtcatattataaactagatgctgaccacaagacatggattattagacgaaaataattccgtcagaggatacttgaaaatatattttagtcattttgaaa |
34573433 |
T |
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| Q |
118 |
gcattttgtatgcttgaatattagtatttcatgctatcttttgtaaagcgagtggaaaatgaaacctaatttttcttgtagcaaaatttaatataatcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34573432 |
gcattttgtatgcttgaatattagtatttcatgctatcttttgtaaagcgagtggaaaatgaaacctaatttttcttgtagcaaaatttaatataatcaa |
34573333 |
T |
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| Q |
218 |
ctgtagcgtgagagtaaggaatacacgcttatggccactaaagccaatcaaacgtgcaatcttcaatatttagcaagaatatacaatagggggtgaaaca |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34573332 |
ctgtagcgtgagagtaaggaatacacgcttatggccactaaagccaatcaaacgtgcaatcttcaatatgtagcaagaatatacaatagggggtgaaaca |
34573233 |
T |
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| Q |
318 |
gaattcaaataattttttgggcctatg |
344 |
Q |
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||||||||||||||||||||||||||| |
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| T |
34573232 |
gaattcaaataattttttgggcctatg |
34573206 |
T |
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