View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2179_low_9 (Length: 275)
Name: NF2179_low_9
Description: NF2179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2179_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 3 - 183
Target Start/End: Original strand, 46913849 - 46914026
Alignment:
| Q |
3 |
atactaaaatatttgttaagttcattaccactaaatacacactatcatgacgtaatacgaagaagaacagtccattaagtttgccactaaaactacgaga |
102 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
46913849 |
atactaaaatatttgttaagttcatgaccgctaaatacacactatcatgacgtaatacgaag---aacagtccattaagtttgccactaaaactacgata |
46913945 |
T |
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| Q |
103 |
gcttggtagcagtagcaaatggtgtttatttgtctgacatttatatataatcaagtatgttgaattggatcgatctactta |
183 |
Q |
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| T |
46913946 |
gcttggtagcaacatcaaatggtgtttctctgtctgacatttatatataatcaagcatattgaattggattgatctactta |
46914026 |
T |
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Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 3 - 183
Target Start/End: Original strand, 5337667 - 5337845
Alignment:
| Q |
3 |
atactaaaatatttgttaagttcattaccactaaatacacactatcatgacgtaatacgaagaagaacagtccattaagtttgccactaaaactacgaga |
102 |
Q |
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|||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||| | |
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| T |
5337667 |
ataccaaaatatttgttaagttcatgaccactaaagacacactatcatgacgtaatacgaaaaa--acaatccattaagtttgccactaaaactacgata |
5337764 |
T |
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| Q |
103 |
gcttggtagcagtagcaaatggtgtttatttgtctgacatttatatataatcaagtatgttgaattggatcgatctactta |
183 |
Q |
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|||||||| |||||||||||||||||||||||| |||||| | ||||||||||| ||||||||||| |||||||||| |
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| T |
5337765 |
gcttggtattagtagcaaatggtgtttatttgtcagacattagttgctaatcaagtatattgaattggattgatctactta |
5337845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 201 - 259
Target Start/End: Original strand, 35751728 - 35751786
Alignment:
| Q |
201 |
gtgtgtcttgtctttggtagcttgattttatctttcttacccgtgtgagagacatatat |
259 |
Q |
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| T |
35751728 |
gtgtgtcttgtcttcggtagcttgattttatctttcttacccgtgtgagagacatatat |
35751786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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