View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2180_high_1 (Length: 697)

Name: NF2180_high_1
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2180_high_1
NF2180_high_1
[»] chr3 (15 HSPs)
chr3 (240-681)||(28916836-28917274)
chr3 (244-508)||(28926072-28926336)
chr3 (17-177)||(28916613-28916773)
chr3 (244-508)||(28902437-28902686)
chr3 (15-177)||(28892245-28892407)
chr3 (26-177)||(28925848-28925999)
chr3 (553-681)||(28926409-28926537)
chr3 (15-177)||(28902199-28902361)
chr3 (563-679)||(28936622-28936738)
chr3 (553-681)||(28903376-28903504)
chr3 (80-174)||(28935507-28935601)
chr3 (276-508)||(28892515-28892741)
chr3 (575-681)||(28893394-28893500)
chr3 (450-508)||(28935823-28935881)
chr3 (268-324)||(28935692-28935748)
[»] chr5 (1 HSPs)
chr5 (285-405)||(34009511-34009631)


Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 240 - 681
Target Start/End: Original strand, 28916836 - 28917274
Alignment:
Q  240 ctggtttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggtatcatcttccccctcacctctttc 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  28916836 ctggtttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggtatc---ttccccctcacctctttc 28916932  T
Q  340 atacggttccaagtcaagcttgatgtttccatttttaatgatgtcacgggcaatataaacatcctgagaattccacccttccnnnnnnnngataacttga 439  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||    
T  28916933 atacggttccaagtcacgcttgatgtttccatttttaatgatgtcacgggcaatataaacatcctgagaattccacccttccttttttttgataacttga 28917032  T
Q  440 taatattctaaaaagtaactttcaactgtatctggatctctcatatctatcttctcctgcaaatgaaaatcacataattataaaacatatggagagagag 539  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28917033 taatattctaaaaagtaactttcaactgtatctggatctctcatatctatcttctcctgcaaatgaaaatcacataattataaaacatatggagagagag 28917132  T
Q  540 ggagagaaagtggtaatacaaggcatgattgaaacaaatatctaaccccatcagaatcaatctccgcatttgtctcaattagaaatgcaagttttgagca 639  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  28917133 ggagagaaagtggtaatacaaggcatgattgaaacaaatatctaaccccatcagaatcaatgtcagcatttgtctcaattagaaatgcaagttttgagca 28917232  T
Q  640 gtgcctacaaaatcctttggttgttttgacagtagcaaattc 681  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  28917233 gtgcctacaaaatcctttggttgttttgacagtagcaaattc 28917274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 244 - 508
Target Start/End: Original strand, 28926072 - 28926336
Alignment:
Q  244 tttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggtatcatcttccccctcacctctttcatac 343  Q
    |||||||||||||||  || | ||||||||| ||||||| ||||||||||  ||  ||||||| ||||| ||||||||||||||||||||| ||||||||    
T  28926072 tttaactcttgacgtttcatcgaagtcgtcacaatcagatcctataaagttgctcacatcagaatcaccagtatcatcttccccctcacctatttcatac 28926171  T
Q  344 ggttccaagtcaagcttgatgtttccatttttaatgatgtcacgggcaatataaacatcctgagaattccacccttccnnnnnnnngataacttgataat 443  Q
    || ||||||||| ||||| | || |||||||||| ||||||||||||||| |||| |||||||||||||  ||||||         ||||||||||||||    
T  28926172 ggatccaagtcacgcttgtttttcccatttttaacgatgtcacgggcaatgtaaatatcctgagaattcagcccttctctttctttgataacttgataat 28926271  T
Q  444 attctaaaaagtaactttcaactgtatctggatctctcatatctatcttctcctgcaaatgaaaa 508  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28926272 attctaaaaagtaactttcaactgtatctggatctctcatatctatcttctcctgcaaatgaaaa 28926336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 28916613 - 28916773
Alignment:
Q  17 cagattaccatcttctttttgttggggtcaaaaagctggnnnnnnnggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggtcg 116  Q
    |||||||||||||||||||| ||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28916613 cagattaccatcttctttttcttggggtcaaaaagctggtttttttggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggtcg 28916712  T
Q  117 tgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28916713 tgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc 28916773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 244 - 508
Target Start/End: Original strand, 28902437 - 28902686
Alignment:
Q  244 tttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggtatcatcttccccctcacctctttcatac 343  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||  ||||||     
T  28902437 tttaactcttgacgtgccaaccaagtcatcacaatcagaacctataaagtcactcgcatcagattcaccagtatcgtcttccccctcacctacttcata- 28902535  T
Q  344 ggttccaagtcaagcttgatgtttccatttttaatgatgtcacgggcaatataaacatcctgagaattccacccttccnnnnnnnngataacttgataat 443  Q
                   ||| | ||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||         ||||||||||||||    
T  28902536 --------------tttgttttttccatttttaatgatgtcacgggcagtataaacatcctgagaattcagcccttcttttttcttgataacttgataat 28902621  T
Q  444 attctaaaaagtaactttcaactgtatctggatctctcatatctatcttctcctgcaaatgaaaa 508  Q
    |||| |||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||    
T  28902622 attcaaaaaagtaactttctattgtatctggatctctcatatctaccttctcctgcaaatgaaaa 28902686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 15 - 177
Target Start/End: Original strand, 28892245 - 28892407
Alignment:
Q  15 cacagattaccatcttctttttgttggggtcaaaaagctggnnnnnnnggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggt 114  Q
    ||||||||||| |||||||||| ||||||||||||||||||       |||||||||||  |||||| ||||||||||||||||||||||||||||||||    
T  28892245 cacagattaccttcttctttttcttggggtcaaaaagctggtttttgtggcagtacttactgatgattgaagcaacatcaatttcggaaaaagctttggt 28892344  T
Q  115 cgtgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc 177  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28892345 cgtgtcttcaccaatatttttaagaaaatctacgagacttcttgaaccccatccaacaaaatc 28892407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 26 - 177
Target Start/End: Original strand, 28925848 - 28925999
Alignment:
Q  26 atcttctttttgttggggtcaaaaagctggnnnnnnnggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggtcgtgtcttcac 125  Q
    ||||||||||| ||||||||||||||||||       ||||||| | || || |||||||||||| ||||||||||||||||||||||||||||||  ||    
T  28925848 atcttctttttcttggggtcaaaaagctggtgtttgtggcagtaatcattgacgatcgaagcaacttcaatttcggaaaaagctttggtcgtgtctctac 28925947  T
Q  126 caatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc 177  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28925948 caatatttttaagaaaatctatgagacttcttgaaccccatcctacaaaatc 28925999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 553 - 681
Target Start/End: Original strand, 28926409 - 28926537
Alignment:
Q  553 taatacaaggcatgattgaaacaaatatctaaccccatcagaatcaatctccgcatttgtctcaattagaaatgcaagttttgagcagtgcctacaaaat 652  Q
    ||||| ||||||||||||||| ||| |||| ||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  28926409 taatataaggcatgattgaaaaaaacatctcaccccatcagaatcaacatcagcatttgtctcaattagaaatgcaagttttgagcagtgcctacaaaat 28926508  T
Q  653 cctttggttgttttgacagtagcaaattc 681  Q
    |||||| || |||||||||| ||||||||    
T  28926509 cctttgtttcttttgacagtggcaaattc 28926537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 15 - 177
Target Start/End: Original strand, 28902199 - 28902361
Alignment:
Q  15 cacagattaccatcttctttttgttggggtcaaaaagctggnnnnnnnggcagtacttatggatgatcgaagcaacatcaatttcggaaaaagctttggt 114  Q
    |||| ||||| ||||||||||| ||||||||||||||||||       |||||||||    ||||||| |||||||||||| ||| || || ||||  ||    
T  28902199 cacaaattacgatcttctttttcttggggtcaaaaagctggtttgtgtggcagtactggatgatgatccaagcaacatcaagttcagacaacgcttcagt 28902298  T
Q  115 cgtgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc 177  Q
    |||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28902299 cgtgtctctaccaatacttttaagaaaatctatgagacttcttgaaccccatccaacaaaatc 28902361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 563 - 679
Target Start/End: Original strand, 28936622 - 28936738
Alignment:
Q  563 catgattgaaacaaatatctaaccccatcagaatcaatctccgcatttgtctcaattagaaatgcaagttttgagcagtgcctacaaaatcctttggttg 662  Q
    |||| ||||||  ||||||| |||||||||||||||| ||| ||||||  |||||||||||||||||||||||||||||||| ||||||||||||| ||     
T  28936622 catgtttgaaaggaatatcttaccccatcagaatcaacctcagcattttcctcaattagaaatgcaagttttgagcagtgcccacaaaatcctttgtttc 28936721  T
Q  663 ttttgacagtagcaaat 679  Q
     ||||||| ||||||||    
T  28936722 gtttgacattagcaaat 28936738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 553 - 681
Target Start/End: Original strand, 28903376 - 28903504
Alignment:
Q  553 taatacaaggcatgattgaaacaaatatctaaccccatcagaatcaatctccgcatttgtctcaattagaaatgcaagttttgagcagtgcctacaaaat 652  Q
    ||||| ||||| ||||| ||| ||| |||| |||||||||||||| |  || |||||| ||||||||||||| |||||||||||||||||||||||||||    
T  28903376 taatataaggcgtgattaaaaaaaaaatcttaccccatcagaatctacgtcagcatttttctcaattagaaaggcaagttttgagcagtgcctacaaaat 28903475  T
Q  653 cctttggttgttttgacagtagcaaattc 681  Q
    |||||| ||  |||||||  |||||||||    
T  28903476 cctttgtttcctttgacaagagcaaattc 28903504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 80 - 174
Target Start/End: Original strand, 28935507 - 28935601
Alignment:
Q  80 atcgaagcaacatcaatttcggaaaaagctttggtcgtgtcttcaccaatatttttaagaaaatctatgagacttcttgaaccccatccaacaaa 174  Q
    |||||||||||||||  ||| | ||| ||||| | |||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28935507 atcgaagcaacatcatgttccgtaaatgcttttgccgtgtctctaccaatatctttaagaaaatctatgagacttcttgaaccccatccaacaaa 28935601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 276 - 508
Target Start/End: Original strand, 28892515 - 28892741
Alignment:
Q  276 aatcagaacctataaagtcacttgcatcagattcaccggtatcatcttccccctcacctctttcatacggttccaagtcaagcttgatgtttccattttt 375  Q
    |||||||| |||| |||| |||  ||||||| ||||||||||||||||||||||||||| ||||||| ||       |||  |||| | |||| |||| |    
T  28892515 aatcagaatctatgaagttactgacatcagactcaccggtatcatcttccccctcacctatttcatatgg------atcacacttgttttttctatttat 28892608  T
Q  376 aatgatgtcacgggcaatataaacatcctgagaattccacccttccnnnnnnnngataacttgataatattctaaaaagtaactttcaactgtatctgga 475  Q
    |||  | |||||||||| |||||| | ||||||||||  ||||||         ||||| ||||||||| || ||||||||||||||   ||||||||||    
T  28892609 aatagtatcacgggcaaaataaacttgctgagaattcagcccttcttttttcttgataatttgataataatcaaaaaagtaactttcttgtgtatctgga 28892708  T
Q  476 tctctcatatctatcttctcctgcaaatgaaaa 508  Q
    ||| ||||||| | ||| |||||||||||||||    
T  28892709 tctttcatatcgaccttttcctgcaaatgaaaa 28892741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 575 - 681
Target Start/End: Original strand, 28893394 - 28893500
Alignment:
Q  575 aaatatctaaccccatcagaatcaatctccgcatttgtctcaattagaaatgcaagttttgagcagtgcctacaaaatcctttggttgttttgacagtag 674  Q
    |||||||| |||||||||||||| |  ||  ||||| ||||||||| | | |||||||||||||||||||||||||||||| || || ||||||||  ||    
T  28893394 aaatatcttaccccatcagaatcgacatcaacatttttctcaattaaataggcaagttttgagcagtgcctacaaaatcctctgtttcttttgacaagag 28893493  T
Q  675 caaattc 681  Q
    |||||||    
T  28893494 caaattc 28893500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 450 - 508
Target Start/End: Original strand, 28935823 - 28935881
Alignment:
Q  450 aaaagtaactttcaactgtatctggatctctcatatctatcttctcctgcaaatgaaaa 508  Q
    ||||||||||||||| ||||||||||||| ||||||||||||| ||||| |||||||||    
T  28935823 aaaagtaactttcaaatgtatctggatctttcatatctatcttttcctgaaaatgaaaa 28935881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 28935692 - 28935748
Alignment:
Q  268 gtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggtatcatcttc 324  Q
    ||||||| |||||||||||||||||| |||  ||||||| ||||| | |||||||||    
T  28935692 gtcgtcacaatcagaacctataaagtaactcacatcagagtcaccagcatcatcttc 28935748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 285 - 405
Target Start/End: Original strand, 34009511 - 34009631
Alignment:
Q  285 ctataaagtcacttgcatcagattcaccggtatcatcttccccctcacctctttcatacggttccaagtcaagcttgatgtttccatttttaatgatgtc 384  Q
    |||||||||||||  ||||||||||||| |||||||||||||||||||||  |||||| || |||||||||  |||| | |||| ||| |||||||||||    
T  34009511 ctataaagtcactcacatcagattcaccagtatcatcttccccctcacctacttcatatggatccaagtcacacttgttttttcaattgttaatgatgtc 34009610  T
Q  385 acgggcaatataaacatcctg 405  Q
    |||||||||||||||||||||    
T  34009611 acgggcaatataaacatcctg 34009631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University