View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2180_high_11 (Length: 475)
Name: NF2180_high_11
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 121 - 465
Target Start/End: Complemental strand, 5431207 - 5430861
Alignment:
| Q |
121 |
caagaaggtttgggacagtgttgagaaacccgtacagggttttaccaaagctgcaagggacctgctgagtagttggaattgggccgatctgcaacaatct |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5431207 |
caagaaggtttgggacagtgttgagaaacccgtacagcgttttatcaaagctgcaagggacctgctgagtagttggaattgggccgatctgcaacaatct |
5431108 |
T |
|
| Q |
221 |
cttgaaataagtcagatgttcgcagctctattttatcaac----atatggaattgggatatgcatctgcaatgacaaaggtgaattcacccgagcaaaaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5431107 |
cttgaaataagtcagatgttcgcagctctattttatcaacatagatatggaattgggatatgcatctgcaatgac--aggtgaattcacccgagcaaaaa |
5431010 |
T |
|
| Q |
317 |
-tttacacaagcattaactcctttctcccaaagaggcggaagctatgggactttatagaagctttaatttggctacttgaaggatttgagcttgttatca |
415 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5431009 |
ttttacacaagcattaactcctttctccgaaagaggcggaagctatgggac-ttatagaagctttaatttggctacttgaaggatttgagcttgttacca |
5430911 |
T |
|
| Q |
416 |
tcgagatcgactgcaaacttctgttgctcgcatcaatgtaaatctctctg |
465 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
5430910 |
tcgagctcgactgcaaactgctgttgctcgcatcaatgtaaatctctctg |
5430861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 5431404 - 5431301
Alignment:
| Q |
18 |
ctatgtggtgtggtagataaacacttttattgtagttacaatgttttagatcgttctagaacaatgtagtaaaaacaaaatcataaagaaataatgtctg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5431404 |
ctatgtggtgtggtagataaacacttttattgtagtgacaattttttagatcgttctagaacgatgtagtaaaaacaaaatcataaagaaataatgtctg |
5431305 |
T |
|
| Q |
118 |
tcgc |
121 |
Q |
| |
|
|||| |
|
|
| T |
5431304 |
tcgc |
5431301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University