View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2180_high_15 (Length: 421)
Name: NF2180_high_15
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 12 - 406
Target Start/End: Complemental strand, 3731881 - 3731487
Alignment:
| Q |
12 |
acctgtgtatattgagagaattgggatgatagatattaacaaactgtggcaaataaccacacaagaaaggcttatcaagcatcatgtgtcagaacaagag |
111 |
Q |
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| T |
3731881 |
acctgtgtatattgagagaattgggatgatagatattaacaaactgtggcaaataaccacacaagaaaggcttatcaagcatcatgtgtcagaacaagag |
3731782 |
T |
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| Q |
112 |
aaaacactaagagtaagataccctgcatgttcattagcagctaaaagacacatagcttccaccacaagtatcttggatgtcaatggagtagtaagcaaat |
211 |
Q |
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| T |
3731781 |
aaaacactaagagttagataccctgcatgttcgttagcagctaaaagacacatagcttccaccacaagtatcttggatgtcaatggagtagtaagcaaat |
3731682 |
T |
|
| Q |
212 |
ttttcagtgtttcataatttatcatatggtctattaatgctgatttggttatgtggttgtattattcttctagggaatgtctaatttctcaaagcctgca |
311 |
Q |
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| T |
3731681 |
ttttcagtgtttcataatttatcatatagtctaataatgctgatttggttatgtggttgtattattcttctagggaatgtctaatttctcaaagcctgca |
3731582 |
T |
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| Q |
312 |
aggtacatcttcatggaaattcagaagattgatagcagttattatcctgaggtactttttgttgatcatagctcatgagcagatgatttggatat |
406 |
Q |
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| T |
3731581 |
aggtacatcttcatggaaattcagaagattgatagcagttattatcctgaggtactttttgttgatcatagctcatgagcagatgatttggatat |
3731487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 14 - 402
Target Start/End: Complemental strand, 11684197 - 11683805
Alignment:
| Q |
14 |
ctgtgtatattgagagaattgggatgatagatattaacaaactgtggcaaataaccacacaagaaaggcttatcaagcatcatgtgtcagaacaagagaa |
113 |
Q |
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| T |
11684197 |
ctgtgtatatcgagagaattgggatgatagatgttaacaaactgtggcaaataaccacacaagaaaggcttatcaagcatcatgtgtcagaacaagagaa |
11684098 |
T |
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| Q |
114 |
aacactaagagtaagataccctgcatgttcattagcagctaaaagacacatagcttccaccacaagtatcttggatgtcaatggagtagtaagcaaattt |
213 |
Q |
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| T |
11684097 |
aaccctaagagtaagataccctgcatgttcattagcagccaaaagacacatagcatccaccacaagtatcttggatggcaatggagtagtaagcaaattt |
11683998 |
T |
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| Q |
214 |
ttc----agtgtttcataatttatcatatggtctattaatgctgatttggttatgtggttgtattattcttctagggaatgtctaatttctcaaagcctg |
309 |
Q |
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| T |
11683997 |
ttcatatagtgtttcataatttactatatggtctaataatgctgattttgttatgtgattgtattattcttctagggaatgtctaatttctcagagcctg |
11683898 |
T |
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| Q |
310 |
caaggtacatcttcatggaaattcagaagattgatagcagttattatcctgaggtactttttgttgatcatagctcatgagcagatgatttgg |
402 |
Q |
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| T |
11683897 |
caaggtaaatcttcatggaaattcagaagattgatagcaattattatcctgaggtactttttgttgatcatagctcatgagcagatgatttgg |
11683805 |
T |
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