View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2180_high_16 (Length: 413)
Name: NF2180_high_16
Description: NF2180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2180_high_16 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Original strand, 36006039 - 36006450
Alignment:
| Q |
1 |
atatgctgcccttgagccggcattcttcttaaatccaacgccatatatatagtatctcaaaaaactagtgtctatagtcatattgggttcctagcttcta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
36006039 |
atatgctgcccttgagccggcattcttcttaaatccaacgccata------gtatctcaaaaaactagtttctatagtcatattgggttcctagcttcta |
36006132 |
T |
|
| Q |
101 |
tataaaccgaagtccaaaagtctaaaaaacacaacttacaacattaaaaccataattaatcaaaagggtttggaagaattgagaagaatggccaagttta |
200 |
Q |
| |
|
||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36006133 |
tataaactgaagtctaaaagtctgaaaaacacaacttacaacattaaaaccataattaattaaaagggtttggaagaattgagaagaatggccaagttta |
36006232 |
T |
|
| Q |
201 |
ctaaaatcagctttgctctaatttttgcactcattctcattatgatgtttatcgctgaaagtcgaccaacacctacaggtaatgcatgctttgaaagnnn |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36006233 |
ctaaaatcagctttgctctaatttttgcactcattctcattatgatgtttatcgctgaaagtcgaccaacacctacaggtaatgcatgctttgaaagaaa |
36006332 |
T |
|
| Q |
301 |
nnnnttaggcttttgaattgtatggccaaatgactataaatatataattaaattttataatagtaaatcactatcta-----aacataaattttgtagtt |
395 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
36006333 |
aaaattaggcttttgaattgcatggccaaatgactataaatatataattaaattttataatagtaaatcactatctaactctaacataaattttgtcgtt |
36006432 |
T |
|
| Q |
396 |
gcagtcccaagatgtgac |
413 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
36006433 |
gcagtcccaagatgtgac |
36006450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 70 - 282
Target Start/End: Original strand, 36009406 - 36009614
Alignment:
| Q |
70 |
gtctatagtcatattgggttcctagcttctatataaaccgaagtccaaaagtctaaaaaacacaacttacaacattaaaaccataattaatcaaaagggt |
169 |
Q |
| |
|
|||||||||| |||| ||||| ||| | |||||||||| |||| || |||||||||||||||||||| ||||||||| ||||||||||| | |||| ||| |
|
|
| T |
36009406 |
gtctatagtcgtattaggttcatagatcctatataaactgaagcccgaaagtctaaaaaacacaactcacaacattagaaccataattagttaaaaaggt |
36009505 |
T |
|
| Q |
170 |
ttggaagaattgagaagaatggccaagtttactaaaatcagctttgctctaatttttgcactcattctcattatgatgtttatcgctgaaagtcgaccaa |
269 |
Q |
| |
|
|||||| | ||||||||||| |||| ||||| ||| |||||||||||||||| |||| |||||| ||||||||||||| | |||||||||||||| |
|
|
| T |
36009506 |
ttggaaca----agaagaatggctaagtcaactaacatctactttgctctaattttttcacttattctcgttatgatgtttattgttgaaagtcgaccaa |
36009601 |
T |
|
| Q |
270 |
cacctacaggtaa |
282 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
36009602 |
caccaacaggtaa |
36009614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University